PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015886558.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 164aa MW: 18601.5 Da PI: 5.422 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13 | 0.00019 | 2 | 17 | 39 | 54 |
TCHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksL 54 +Ka+i + A++YI++L XP_015886558.1 2 DKASIIKDAIDYIQQL 17 8**************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-7 | 1 | 33 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-5 | 1 | 32 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 8.607 | 1 | 17 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MDKASIIKDA IDYIQQLHEQ ERRIQAEIME LESGKLKKNP GGYDFEQELP VLLRSKKKKT 60 EQFYDSGGSR TSPIEVLDLR VTYMGDRTLV VSLTCSKKTD TMVKICEVFE SLKLKIITAN 120 ITAFSGRLLK TVFVEADEEE KEQLKIKIET AIAALNDPQS PMSI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015886558.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015886558.1 | 1e-117 | transcription factor bHLH35 | ||||
Swissprot | Q2HIV9 | 3e-57 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A059CQV2 | 2e-99 | A0A059CQV2_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059CRK7 | 2e-99 | A0A059CRK7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010048564.1 | 1e-100 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 8e-52 | bHLH family protein |