PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015886035.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GATA | ||||||||
Protein Properties | Length: 353aa MW: 38538.6 Da PI: 4.5472 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.7 | 4.9e-16 | 206 | 242 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ XP_015886035.1 206 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 242 *******99*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 4.2E-7 | 66 | 101 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 12.942 | 66 | 101 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.5E-10 | 69 | 100 | IPR010399 | Tify domain |
Pfam | PF06203 | 9.8E-15 | 134 | 175 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.65 | 134 | 176 | IPR010402 | CCT domain |
SMART | SM00401 | 2.7E-8 | 200 | 253 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.524 | 200 | 248 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-11 | 202 | 250 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-14 | 204 | 247 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 9.65E-16 | 205 | 249 | No hit | No description |
Pfam | PF00320 | 6.8E-14 | 206 | 242 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 206 | 233 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MAAANPQPLQ ARPFEEHLRG PIPIEDDDGE YEEGGGGGND GDDGMDEVEE NRINSANVIE 60 HGAMVMASRT SELTLSFEGE VYVFPAVTPE KVQAVLLLLG GRDIPTGVPT TIEVPYDQNR 120 VVGDTPKRSN LSRRIASLVR FREKRKERCF DKKIRYTVRK EVAQRMHRKN GQFASLKESS 180 GTSSWDSAKS CLQNGTPRPE TVLRKCQHCG VSENNTPAMR RGPAGPRTLC NACGLMWANK 240 GTLRDLSKGG RNLSMDHIEP ETPLDVKPSI AEGELSGNQD GHGTPEDPSK TVTEGSNDPS 300 VNPDEEDLHE AAEDLTNTMP IGLVHSSTND EEEPLVELAN PSDTDIDIPA NFD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 128 | DTPKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015886035.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015886035.1 | 0.0 | GATA transcription factor 24-like isoform X1 | ||||
Swissprot | Q8GXL7 | 4e-73 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A2P5EWB0 | 0.0 | A0A2P5EWB0_TREOI; GATA transcription factor | ||||
STRING | XP_008219237.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3319 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.1 | 2e-74 | ZIM-like 1 |
Publications ? help Back to Top | |||
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