PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885926.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CPP
Protein Properties Length: 556aa    MW: 61408.7 Da    PI: 7.9307
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885926.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.39.5e-16120158341
             TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     +k+CnCkk+kClk+YC+Cfaag +C+e C C++C+N+ e
  XP_015885926.1 120 CKHCNCKKTKCLKLYCDCFAAGIYCAEPCACQGCFNRPE 158
                     89**********************************876 PP
2TCR50.54.2e-16206244139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks ClkkYCeC++a++ Cs  C+C++CkN 
  XP_015885926.1 206 RHKRGCNCKKSMCLKKYCECYQANVGCSTGCRCDGCKNV 244
                     589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.1E-16118159IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.886119246IPR005172CRC domain
PfamPF036381.6E-11121156IPR005172CRC domain
SMARTSM011149.9E-17206247IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.0E-11208243IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MGHASTASIK LEDLYMGVQG KKPTSVSSQV IEKTKSFSSS LSNVEKNSAG DEERWFETKA  60
LTAASSATTV SPNNLEFEYQ VVQDEIEKPN FQKADSFEEY DQPSPTKKRK KTSATESDGC  120
KHCNCKKTKC LKLYCDCFAA GIYCAEPCAC QGCFNRPEYE DTVLETRQQI ESRNPLAFAP  180
KIVQRVTEFP PNNAEDGSRM TPSSARHKRG CNCKKSMCLK KYCECYQANV GCSTGCRCDG  240
CKNVYGRKEE YIAVEHGLAK EMVSNAASKD NLEDAFDGKL EMVPIKRNPI HAELHDVHDL  300
TPLTPTFQYS DHGKNVPKSR FLSKRSPESD LSILSSYEKY SRSSRSSTRN LEDNDILSGR  360
DKDLLNLDSY DWQADYNIGT MDPNTPRCDT GPNVCHLTAP SDTSSTAMAS CRARDWTNVS  420
KVQRCPGSDS LSSGSSLRWR NSPVTPVTRI VGTKSLQGLE SGREIHDILQ DDTPEILKDS  480
STPIKSVKAS SPNKKRVSPP HGHIRELGSS SSGALRSGRK FILKAVPSFP PLTPCIDSKG  540
STIQETSNLQ DNNSNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1812124412121Protein lin-54 homolog
5fd3_B2e-1812124412121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106110KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885926.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885926.20.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A251RE800.0A0A251RE80_PRUPE; Uncharacterized protein
TrEMBLA0A251RGL40.0A0A251RGL4_PRUPE; Uncharacterized protein
STRINGXP_008229954.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85652841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.19e-64TESMIN/TSO1-like CXC 2