PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885804.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TALE
Protein Properties Length: 482aa    MW: 52804.3 Da    PI: 6.4436
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885804.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-074314642154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_015885804.1 431 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 464
                     469*****************************87 PP
2ELK28.63.2e-10385406122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_015885804.1 385 ELKHELKQGYKEKIVDIREEIL 406
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.0E-20220264IPR005540KNOX1
PfamPF037903.2E-17222263IPR005540KNOX1
SMARTSM012562.7E-29273328IPR005541KNOX2
PfamPF037913.2E-21277327IPR005541KNOX2
SMARTSM011886.1E-4385406IPR005539ELK domain
PfamPF037891.1E-6385406IPR005539ELK domain
PROSITE profilePS512139.969385405IPR005539ELK domain
PROSITE profilePS5007111.726405468IPR001356Homeobox domain
SuperFamilySSF466896.42E-16407470IPR009057Homeodomain-like
SMARTSM003894.7E-11407472IPR001356Homeobox domain
CDDcd000861.16E-11408469No hitNo description
Gene3DG3DSA:1.10.10.605.3E-25412469IPR009057Homeodomain-like
PfamPF059201.4E-17425464IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAYHNHLSQD LPLHHFTNQS QQQQQQNQSL ADSTTLRTIL PDQLTVSHHS SSPDPNSKNS  60
EPHHHHHHPL QTAPNWLNNA LLRTTTQSHF GTTTTATTTN TTDNTNNNNH STNFLNLHTA  120
SDSPASQASN QWLSRPMLQR NHSDVIDDVA AAAAAAAAAA AAGESMIAGT LSHDSTGELK  180
NGGDNLNKSE GGGGVVVESG VGGGGGGSGG GEGVINWQNA RCKAEILAHP LYDQLLSAHV  240
ACLRIATPVD QLPRIDAQLA QSQNVVAKYS ALGHGLVGDD KELDQFMTHY VLLLCSFKEQ  300
LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGTGATMS DDDDDQVDSD ANLFDGSLEG  360
PDTMGFGPLI PTESERSLME RERVELKHEL KQGYKEKIVD IREEILRKRR AGKLPGDTTS  420
VLKAWWQSHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP STSTVLKSKR  480
KR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1461481RKRNWHSNPSTSTVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885804.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885802.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A2I4GIR70.0A0A2I4GIR7_JUGRE; homeobox protein knotted-1-like 3 isoform X1
STRINGXP_004290929.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-174KNOTTED1-like homeobox gene 3