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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015885803.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | TALE | ||||||||
Protein Properties | Length: 493aa MW: 53944.4 Da PI: 6.3133 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.2 | 1.2e-07 | 431 | 464 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + XP_015885803.1 431 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 464 469*****************************87 PP | |||||||
2 | ELK | 28.6 | 3.3e-10 | 385 | 406 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ XP_015885803.1 385 ELKHELKQGYKEKIVDIREEIL 406 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 7.0E-20 | 220 | 264 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.3E-17 | 222 | 263 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.7E-29 | 273 | 328 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.3E-21 | 277 | 327 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.1E-4 | 385 | 406 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.2E-6 | 385 | 406 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 385 | 405 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 405 | 468 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-11 | 407 | 472 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-16 | 407 | 470 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.52E-12 | 408 | 469 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-25 | 412 | 469 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.4E-17 | 425 | 464 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MAYHNHLSQD LPLHHFTNQS QQQQQQNQSL ADSTTLRTIL PDQLTVSHHS SSPDPNSKNS 60 EPHHHHHHPL QTAPNWLNNA LLRTTTQSHF GTTTTATTTN TTDNTNNNNH STNFLNLHTA 120 SDSPASQASN QWLSRPMLQR NHSDVIDDVA AAAAAAAAAA AAGESMIAGT LSHDSTGELK 180 NGGDNLNKSE GGGGVVVESG VGGGGGGSGG GEGVINWQNA RCKAEILAHP LYDQLLSAHV 240 ACLRIATPVD QLPRIDAQLA QSQNVVAKYS ALGHGLVGDD KELDQFMTHY VLLLCSFKEQ 300 LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGTGATMS DDDDDQVDSD ANLFDGSLEG 360 PDTMGFGPLI PTESERSLME RERVELKHEL KQGYKEKIVD IREEILRKRR AGKLPGDTTS 420 VLKAWWQSHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP STSTVLKSKR 480 KSNAGENSSD RFM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015885803.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015885803.1 | 0.0 | homeobox protein knotted-1-like 3 isoform X2 | ||||
Swissprot | O04136 | 0.0 | KNAP3_MALDO; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A2I4GIQ8 | 0.0 | A0A2I4GIQ8_JUGRE; homeobox protein knotted-1-like 3 isoform X2 | ||||
STRING | XP_004290929.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-178 | KNOTTED1-like homeobox gene 3 |