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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015885426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | B3 | ||||||||
Protein Properties | Length: 109aa MW: 12639.3 Da PI: 9.5166 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.1 | 9.9e-11 | 9 | 100 | 8 | 95 |
-HHHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 8 sdvlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 s + +r+v+p f + + + ++ ++t++ +g ++++ l++ +++++ ++ ++GW++Fv++ng+ +gD + F d+ +++e+v XP_015885426.1 9 SQNDFASRFVVPTAFHRLIsgcD----GGAEITVRAyDTGVRYDFVLSVrtgerDRYPKPVFQQRGWQRFVRENGVLTGDEIRFWKDE-QTGEFV 98 333444579******98886331....4556777776699*******99655555555559999*******************99333.666556 PP EE CS B3 94 vk 95 ++ XP_015885426.1 99 IR 100 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.896 | 2 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-9 | 4 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.47E-13 | 6 | 100 | No hit | No description |
SuperFamily | SSF101936 | 2.16E-10 | 6 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.5E-8 | 11 | 99 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MAVLSKVVSQ NDFASRFVVP TAFHRLISGC DGGAEITVRA YDTGVRYDFV LSVRTGERDR 60 YPKPVFQQRG WQRFVRENGV LTGDEIRFWK DEQTGEFVIR SVRPYINYL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015885426.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |