PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885283.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 305aa    MW: 35017.8 Da    PI: 5.2065
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885283.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-1959112356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++++q+++Le+ Fe ++++  e++++LA++lgL+ rqV +WFqNrRa++k
  XP_015885283.1  59 KKRRLSSDQVKALERNFEIENKLEPERKAKLAEELGLQPRQVAIWFQNRRARWK 112
                     45689************************************************9 PP
2HD-ZIP_I/II127.84.5e-4159150293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrls++qvk+LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk++ydal+ + e+L++++e+L+e++++
  XP_015885283.1  59 KKRRLSSDQVKALERNFEIENKLEPERKAKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYNLLKTNYDALNINYENLRQQNEALNEKIRQ 150
                     9**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.42E-1952116IPR009057Homeodomain-like
PROSITE profilePS5007117.44354114IPR001356Homeobox domain
SMARTSM003894.9E-1857118IPR001356Homeobox domain
PfamPF000465.9E-1759112IPR001356Homeobox domain
CDDcd000865.22E-1659115No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2061121IPR009057Homeodomain-like
PRINTSPR000313.6E-68594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000313.6E-694110IPR000047Helix-turn-helix motif
PfamPF021837.0E-14114154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKRFSSSDSL GALISICPPK GLVNIEERKV KESHGYSKEF QAMLDSLDQE DSVEEFTGKK  60
RRLSSDQVKA LERNFEIENK LEPERKAKLA EELGLQPRQV AIWFQNRRAR WKTKQLERDY  120
NLLKTNYDAL NINYENLRQQ NEALNEKIRQ LKAKVCRESA ESNPSVKEEE SPTSRCEIES  180
STALDHRKNS DVQDNSDKTG SEMYGNMKLF KDGSSDSDSN GIIIMKEESN ANFSLGLNGS  240
FSSSNSATTN WFQISESRPS SFHPVKVCQT QFMRMEENGL FSNEESCNFF SVDQAPTLHW  300
YFPEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885283.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885283.10.0homeobox-leucine zipper protein ATHB-6-like isoform X2
RefseqXP_015885285.10.0homeobox-leucine zipper protein ATHB-6-like isoform X2
TrEMBLM5XLY11e-120M5XLY1_PRUPE; Uncharacterized protein
STRINGEMJ269491e-121(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.19e-62homeobox protein 6