PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015885132.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 433aa MW: 46916.1 Da PI: 6.1192 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.1 | 4.3e-10 | 274 | 322 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq XP_015885132.1 274 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 322 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.58E-11 | 269 | 326 | No hit | No description |
SuperFamily | SSF47459 | 6.8E-17 | 269 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.485 | 271 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 272 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-7 | 274 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-10 | 277 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MSGHENEDVG FQHRSESILN CPSSGMSTTH LPEKVSGMTM SSLSIFKPSN GADPFFASAW 60 DPIVSLSQSE NFGDSSMVSH GELSNPPYPV VLENQGMNST SHLVQYPSDS SFVEMVPKLP 120 CFGSGSFSEM VGSFGLAECS GIANTGCPPK YTLHKEKATE RASPIGAQSH DGRETEDGGI 180 GSSSSGKRRK RALDSSSPFS PNKNAEGEQH KDLSGESSDV MKDHEEKKHK AEENTSGNIR 240 NKQTGKQSKD SSHSEEAPKE NYIHVRARRG QATNSHSLAE RVRREKISER MRLLQELVPG 300 CNKITGKAVM LDEIINYVQS LQQQVEFLSM KLATVNPELN IDIERILSKD ILNSRGGNGA 360 IFGFGPGINS SQPYQHGIFQ GTLPTVPSTS PQYTSLPQTV LDNELQGLFH MGFDSSSAID 420 NLGANAGLLK PEL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015885132.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024930783.1 | 0.0 | transcription factor bHLH74 isoform X1 | ||||
TrEMBL | A0A251RBF7 | 0.0 | A0A251RBF7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008220406.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7585 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 4e-81 | bHLH family protein |