PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015885101.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 288aa MW: 31701.5 Da PI: 7.4744 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.6 | 2.5e-19 | 137 | 191 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+k+ +++ ++++eLA++l+L rqV vWFqNrRa+ k XP_015885101.1 137 RKKLRLTKEQSATLEDSFKKHTTLNPKQKQELARQLNLRPRQVEVWFQNRRARTK 191 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.5 | 9.9e-40 | 137 | 225 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq+++LE+sF+++++L+p++K+elar+L+l+prqv+vWFqnrRARtk+kq+E d+e Lk+++++l+een+rL+ke +eL++ XP_015885101.1 137 RKKLRLTKEQSATLEDSFKKHTTLNPKQKQELARQLNLRPRQVEVWFQNRRARTKLKQTEADCELLKKCCETLTEENNRLKKELQELKA 225 69*************************************************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.864 | 133 | 193 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.1E-18 | 135 | 197 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-19 | 135 | 201 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.70E-17 | 136 | 194 | No hit | No description |
Pfam | PF00046 | 8.4E-17 | 137 | 191 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-18 | 137 | 191 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 168 | 191 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.6E-21 | 193 | 236 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.6E-8 | 193 | 226 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MDLDDGCEIG LGLGLVSRNF QQYSDDHHHQ NKKRQLSLKY DHLVPSLTLG PSPKAYQPAA 60 APKIEPSTRV GPYAGESAAD LQPQASSFSG VSSFSNSSSV KRDRDLAGEE VEAEAEVERV 120 SSRISITDQE DEEGSPRKKL RLTKEQSATL EDSFKKHTTL NPKQKQELAR QLNLRPRQVE 180 VWFQNRRART KLKQTEADCE LLKKCCETLT EENNRLKKEL QELKASKLTP PVYMHLPTAT 240 LSMCPSCERI CAGSTGGGGG DDGTSSAPFS IGGKPHFFSP FTHPSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 193 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015885101.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015885101.1 | 0.0 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 5e-85 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A2C9VXJ5 | 1e-105 | A0A2C9VXJ5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026976m | 1e-106 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 8e-82 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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