PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015885081.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

MYB_related

Protein Properties

Length: 361aa MW: 40630.5 Da PI: 6.7097

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015885081.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.6e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl XP_015885081.1 14 KGPWSPEEDAKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.772	9	66	IPR017930	Myb domain
SMART	SM00717	5.4E-13	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	6.5E-16	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-25	15	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-18	15	85	IPR009057	Homeodomain-like
CDD	cd00167	5.42E-10	16	62	No hit	No description
SMART	SM00717	27	67	116	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYITLKLIN LVFSFSFFFF FFDNDIKNYW NTRLKKKLLG 120 KQRKDQQARK GSKQKGTAGS NSMVSDNNNI INNSPNPYWP ELPLLASAVQ YSNQEPSFND 180 HASLRKLLIK LGGRFSHQPI SHDDGTISSC DQLFPIESIS SSKQVYEKDS AASNIPSIIS 240 SGPTVLASNT TSSTQFAPLL DHPYNTYAEM LQGDNNSSSC YSAELEEMVM YNNPQRTLDG 300 LEFLYGDEAT LMHNVDRNGG TWGEMGSLVY QPVANSDYEG LQQEIMPQES LFNELSYQRS 360 H

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYITLKLIN LVFSFSFFFF FFDNDIKNYW NTRLKKKLLG  120
KQRKDQQARK GSKQKGTAGS NSMVSDNNNI INNSPNPYWP ELPLLASAVQ YSNQEPSFND  180
HASLRKLLIK LGGRFSHQPI SHDDGTISSC DQLFPIESIS SSKQVYEKDS AASNIPSIIS  240
SGPTVLASNT TSSTQFAPLL DHPYNTYAEM LQGDNNSSSC YSAELEEMVM YNNPQRTLDG  300
LEFLYGDEAT LMHNVDRNGG TWGEMGSLVY QPVANSDYEG LQQEIMPQES LFNELSYQRS  360
H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-13	14	118	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015885081.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP229585	1e-73	KP229585.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB29) mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024930358.1	1e-160	uncharacterized protein LOC107420595
Swissprot	Q9M2Y9	3e-67	RAX3_ARATH; Transcription factor RAX3
TrEMBL	J7FAY5	1e-124	J7FAY5_QUESU; R2R3-MYB transcription factor MYB1.1
STRING	VIT_18s0001g08470.t01	1e-119	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	9e-62	myb domain protein 84

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Pal S, et al. TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation. Plant Physiol., 2017. 175(2): p. 916-926 [PMID:28827455]