PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885026.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 348aa    MW: 38744.2 Da    PI: 5.0119
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885026.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.7e-102743141055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k +q
  XP_015885026.1 274 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFMQ 314
                     9******************97.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-13264331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.551264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-12269324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-11273318No hitNo description
PfamPF000103.1E-7274314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEFLGAFPDG EWDSLGKMFS TEELEFMPHF LGQFSFPLDH NEGLNLGPST FCPNSEATMG  60
LDGVNESLFH SLDSFNSNMH YISQESSFSS CATPTQRSYN FSDSYQIPVI DNISMDVCMM  120
DETNVGSYIP AFTDIVMGET VCIKQYDGSP DQTVSVNELQ LKRKYDVCTG AEDKSIDTDS  180
TPQNLKKKPR VSRKVPKSKK RAGSKKRQKQ ASNGKDEESN TQSTSSYSSE DDNASLESNG  240
GLTSDTKPSA AVNLNGKTRA SRGSATDPQS LYARKRRERI NERLRILQNL VPNGTKVDIS  300
TMLEEAVHYV KFMQLQIKLL SSEDLWMYAP IAYNGVDIGF NQKISPLL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885026.10.0transcription factor bHLH85-like
RefseqXP_015900464.10.0transcription factor bHLH85-like
TrEMBLM5XIA21e-133M5XIA2_PRUPE; Uncharacterized protein
STRINGXP_008220363.11e-134(Prunus mume)
STRINGEMJ252311e-134(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-45bHLH family protein