PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884897.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 675aa    MW: 74674.4 Da    PI: 6.9126
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884897.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182078357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR k+++
  XP_015884897.1 20 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRREKQRQ 78
                    5679*****************************************************96 PP
2START155.83.6e-4913131328205
                     CCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.T CS
           START  28 engdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlg 119
                     ++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+s+g  g+++l +++l+a+++l+p Rdf+ +Ry+  l+
  XP_015884897.1 131 QPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWYRDCRAVDVLNVLSTGngGTIELLYMQLYAPTTLAPaRDFWLLRYTSVLE 224
                     578999**************************.8888888888**************************************************** PP

                     TS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 120 agdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                     +g++v++++S++++q+ p+    +++vRae+lpSg+li+ +++g+s +++v+h++l+ ++++++lr+l++s++  ++kt++a+l+++++
  XP_015884897.1 225 DGSLVVCERSLNNTQNGPTmppVQNFVRAEMLPSGYLIRACEGGGSIIHVVDHMELEPWSVPEVLRPLYESSTLLAQKTTMAALRHLRQ 313
                     *****************9998899************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.8721579IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-171678IPR009057Homeodomain-like
SMARTSM003892.0E-131783IPR001356Homeobox domain
SuperFamilySSF466891.2E-161983IPR009057Homeodomain-like
CDDcd000866.09E-162080No hitNo description
PfamPF000464.0E-162178IPR001356Homeobox domain
SMARTSM002345.4E-31101314IPR002913START domain
CDDcd088754.18E-69123314No hitNo description
PfamPF018522.0E-46131313IPR002913START domain
SuperFamilySSF559611.0E-31132315No hitNo description
Gene3DG3DSA:3.30.530.201.5E-21143310IPR023393START-like domain
PROSITE profilePS5084820.511150323IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MMAVTSSCKD GTKIAMDNGK YVRYTPEQVE ALERLYHECP KPSSIRRQQL IRECPILSNI  60
EPKQIKVWFQ NRREKQRQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYENSYF  120
RQQTQNCKSL QPGPDSIGIV AISHGCTGVA ARACGLVGLE PTRVAEILKD RPSWYRDCRA  180
VDVLNVLSTG NGGTIELLYM QLYAPTTLAP ARDFWLLRYT SVLEDGSLVV CERSLNNTQN  240
GPTMPPVQNF VRAEMLPSGY LIRACEGGGS IIHVVDHMEL EPWSVPEVLR PLYESSTLLA  300
QKTTMAALRH LRQISQDVSQ PNATGWGRRP AALRALSQRL SKGFNEAVNG FTDEGWSMLE  360
SDGIDDVTLL VNSSPSKMMG VNLSYPNGFP SVSNAVLCAK ASMLLQNVPP AILLRFLREH  420
RSEWADSSID AYSAAAIKAG PCSLPVSRAG SFGGQVILPL AHTIEHEEFM EVIKLENMGH  480
YRDDMIMPVD IFLLQLCSGV DENAIGTCAE LVFAPIDASF SDDAPILPSG FRIIPLDSGM  540
DTPSPNRTLD LASALEVGPT GNRASGDNAS NSGNRKSVMT IAFQFAFEMH LQENVAAMAR  600
QYVRSIIASV QRVALALSPS NFGSHAGFRP PPGSPEAQTL ARWICQSYRA VAWKVLNEEE  660
NAHCICFMFI NWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884897.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614652.10.0PREDICTED: homeobox-leucine zipper protein ATHB-8-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2P5BF580.0A0A2P5BF58_TREOI; Octamer-binding transcription factor
STRINGGorai.009G049100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]