PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015884750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | B3 | ||||||||
Protein Properties | Length: 394aa MW: 44772.1 Da PI: 9.1743 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.1 | 1.6e-18 | 31 | 113 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 d + + l +pkkf++ ++kk+ + + l+ +sg W+v l + k+ +++++ GW+eFvk++ Lk +D +vF+++g+s+f v +f+ XP_015884750.1 31 DDFDQE-LAVPKKFCN--NLKKKLPDVVALKGPSGLLWTVGL--TTKDTAVFFKHGWQEFVKDHSLKPNDLLVFRYNGESQF--DVLMFD 113 555554.99******4..455669999***************..*********************************99999..777776 PP | |||||||
2 | B3 | 34.6 | 3.4e-11 | 269 | 365 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE...E-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk...ldgrsefel 92 f ++ p+ v k+ + lp +++h+ ++++++l+ W+ k++y+++++ +t GWk F+ +n+L+e D +vF+ +++f l XP_015884750.1 269 FMIIMRPNQVYKRFYMLLPSGWVSNHMAL--QNQDVILR-IGKSCWRTKFTYNRTRRVGGITCGWKFFAVDNNLEEFDACVFEpgiP-LSNTFVL 359 66789999***************999655..34467755.466789999999***99999***********************5321.2367777 PP EEEEE- CS B3 93 vvkvfr 98 vk+fr XP_015884750.1 360 DVKIFR 365 777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.47E-21 | 22 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.79 | 22 | 115 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.42E-17 | 24 | 113 | No hit | No description |
SMART | SM01019 | 8.2E-15 | 25 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-21 | 26 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.7E-15 | 33 | 112 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-14 | 262 | 365 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.04E-12 | 266 | 349 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.86E-13 | 268 | 365 | No hit | No description |
Pfam | PF02362 | 2.3E-9 | 269 | 365 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.742 | 269 | 367 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-5 | 269 | 367 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MGESCKDCSK WAEDIYWAHF QTIRFSQTLL DDFDQELAVP KKFCNNLKKK LPDVVALKGP 60 SGLLWTVGLT TKDTAVFFKH GWQEFVKDHS LKPNDLLVFR YNGESQFDVL MFDSENMCEK 120 EASYFVRKYG HSKHENGCLT KRKSREISSE EMHASSKNGG CSVLEKSEDD PSIALPSEEQ 180 VITPVTDEKK VQSKTKSAQP TRSRRIAAKR GRPAGSVRLL NNTKDAPNKG SSGAYFMEYV 240 SNRRPITEEE KMKAQQLAQE ASSTSLESFM IIMRPNQVYK RFYMLLPSGW VSNHMALQNQ 300 DVILRIGKSC WRTKFTYNRT RRVGGITCGW KFFAVDNNLE EFDACVFEPG IPLSNTFVLD 360 VKIFRVVEDF TPPTGTSSAT PKGTKRKLIV PMDT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015884750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015884746.1 | 0.0 | B3 domain-containing protein REM16 | ||||
Refseq | XP_015884748.1 | 0.0 | B3 domain-containing protein REM16 | ||||
Refseq | XP_015884749.1 | 0.0 | B3 domain-containing protein REM16 | ||||
Refseq | XP_015884750.1 | 0.0 | B3 domain-containing protein REM16 | ||||
Refseq | XP_015884751.1 | 0.0 | B3 domain-containing protein REM16 | ||||
Refseq | XP_015884752.1 | 0.0 | B3 domain-containing protein REM16 | ||||
Refseq | XP_015884753.1 | 0.0 | B3 domain-containing protein REM16 | ||||
Refseq | XP_024930277.1 | 0.0 | B3 domain-containing protein REM16 | ||||
Refseq | XP_024930278.1 | 0.0 | B3 domain-containing protein REM16 | ||||
Refseq | XP_024930279.1 | 0.0 | B3 domain-containing protein REM16 | ||||
TrEMBL | A0A2P5FMY3 | 1e-146 | A0A2P5FMY3_TREOI; B3 DNA binding domain containing protein | ||||
STRING | XP_010089922.1 | 1e-134 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-71 | B3 family protein |