PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884739.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 630aa    MW: 70321.1 Da    PI: 8.9198
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884739.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.1e-1922107899
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     s++l+s rl +p kf+++ +g + +s  ++l  +sg++W+v+l   ++ +  ++  GW +Fv+++++  gDf+vF++dg+ +f  +v+vf++
  XP_015884739.1  22 SSNLSSERLKIPAKFMQHLEGRTYGS--VSLVGPSGNTWQVNL--VQQNDDLFFHHGWPDFVRDHHIVCGDFLVFRYDGELNF--TVQVFDQ 107
                     89999***********7778887775..9**************..8888899*************************986666..9**9997 PP
2B348.51.6e-15277368397
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++++ +v+ s  l +p +f  +h   ++++++++l++++g+ W+v+    ++   +++l +GW  Fv+ n++k+gD+++F+l+++ ef  +v++
  XP_015884739.1 277 RIMKSFNVSGSYTLNIPYQFSMAHL--PNCKVKIVLKNSQGECWTVNSVPsTRVHTSHTLCGGWMAFVRYNDIKVGDICIFELVSEYEF--HVHI 367
                     55666678888899******98996..4699****************9445555667999**********************9987777..8888 PP

                     E CS
              B3  97 f 97 
                     +
  XP_015884739.1 368 L 368
                     6 PP
3B3482.2e-15506598196
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     f+k++++ + + s  l +p +f ++h  +     +++++l++++g+ W+v+ i + k+++ +++ +GW  Fv+ n+++ gD+++F+l+g+ e   
  XP_015884739.1 506 FVKIMKKFNISGSYTLKIPYQFSTAHlpS----YKTEVVLRNSRGECWTVNSIPDSKGRMvHTFCGGWMAFVRGNDVNFGDICIFELIGKCEM-- 594
                     778888888888889********999533....3458***************8877777779999***********************96555.. PP

                     EEEE CS
              B3  93 vvkv 96 
                     +v++
  XP_015884739.1 595 RVHI 598
                     5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-249110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2310110IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-1915106No hitNo description
PROSITE profilePS5086314.64915108IPR003340B3 DNA binding domain
SMARTSM010191.2E-1517108IPR003340B3 DNA binding domain
PfamPF023629.7E-1720107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-23266369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-24268369IPR015300DNA-binding pseudobarrel domain
CDDcd100171.66E-19273368No hitNo description
PfamPF023622.9E-12275367IPR003340B3 DNA binding domain
PROSITE profilePS5086313.338275371IPR003340B3 DNA binding domain
SMARTSM010194.0E-11275371IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-22498599IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-22499600IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-19504598No hitNo description
PROSITE profilePS5086312.492506602IPR003340B3 DNA binding domain
PfamPF023626.5E-13506598IPR003340B3 DNA binding domain
SMARTSM010192.2E-12506602IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MAREAHKEMS TDKRPHFFAF YSSNLSSERL KIPAKFMQHL EGRTYGSVSL VGPSGNTWQV  60
NLVQQNDDLF FHHGWPDFVR DHHIVCGDFL VFRYDGELNF TVQVFDQSAC QKEAAFHSEC  120
SQDPRISDKI LGQKREREED VSSSDKIVEG VLKKMRERTS HSYSECVDNN QQARLNTRNG  180
EGCQFEGVLV SKPCEEARLS TETKQCGCSP KSSAIPSRTE GCNEKPALDV VLFKTKAIQS  240
ISSKGDGFNL NGRVCVQMSS AHEVAQSFTS SFPYFMRIMK SFNVSGSYTL NIPYQFSMAH  300
LPNCKVKIVL KNSQGECWTV NSVPSTRVHT SHTLCGGWMA FVRYNDIKVG DICIFELVSE  360
YEFHVHILGE GVDCQSGKVA PSRPPAGRAV ASHKNYKSLS KKMKGNSSKV HSKSLKMLEL  420
ADKRVSKKHL DAAFADDTKK HGSTSKTFSR VAVCSQSKAA TKKLVVCRKK GAEDELGPQA  480
RSGLRMMLAL DEERVARSFT SCFPSFVKIM KKFNISGSYT LKIPYQFSTA HLPSYKTEVV  540
LRNSRGECWT VNSIPDSKGR MVHTFCGGWM AFVRGNDVNF GDICIFELIG KCEMRVHISG  600
VGKKELDFQG GEATLNELAL VSSISHHPSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884739.10.0B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A2P5FN210.0A0A2P5FN21_TREOI; B3 DNA binding domain containing protein
STRINGXP_010089923.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-18B3 family protein