PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884721.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 316aa    MW: 34758.1 Da    PI: 8.3589
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884721.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.4e-30133191158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                     ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaedp++++ tYegeHnh
  XP_015884721.1 133 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSAEDPSLLVATYEGEHNH 191
                     58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-29124194IPR003657WRKY domain
PROSITE profilePS5081126.877128194IPR003657WRKY domain
SuperFamilySSF1182906.15E-25130194IPR003657WRKY domain
SMARTSM007745.3E-34133193IPR003657WRKY domain
PfamPF031062.4E-24134191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDTKSVNISL DLNLNPLHRI DELAPAASAG ALAEELNRIS TENKKLAQKL TAMCESYNAL  60
QNHFREMISK NPDFLRKRKP DSEDYNSAIG FTNNGNTECS SSDEDSYKWP RAIKSKLSRV  120
CVRTDSSNTS LLVKDGYQWR KYGQKVTRDN PSPRAYFKCS FAPSCPVKKK VQRSAEDPSL  180
LVATYEGEHN HIHPSQAEIS ISPSQAAKLV SSSSLPISAA STISNNRSLS TSTLTLNLME  240
PALGACNTST NTSSNNMNAK LIAVQENINE AAPAGFMQQF LVKEMASSLT RDPNFTAALA  300
SAISERMVDL THMEKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21118194174WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479LRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884721.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884721.10.0probable WRKY transcription factor 40 isoform X2
TrEMBLA0A061GIH62e-96A0A061GIH6_THECC; WRKY transcription factor, putative
STRINGEOY293464e-97(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.23e-66WRKY DNA-binding protein 18