PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884442.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TALE
Protein Properties Length: 571aa    MW: 64137.9 Da    PI: 6.6677
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884442.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.72e-084935311854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  XP_015884442.1 493 MFQNflHPYPKDAEKHLLAVKSGLTRNQVSNWFINARVR 531
                     5887779******************************88 PP
2BELL85.75.4e-28364433171
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                     +r+++++kkakLl ll++Vd+rY+q+ ++++tvis+F+a+++l++ ++++++Al++iS  +++L+++i++q
  XP_015884442.1 364 QRRAVERKKAKLLALLQMVDDRYNQCLDEIHTVISAFHAATELDP-QIHARFALQTISVLYKNLRERISNQ 433
                     68999****************************************.**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-32294432IPR006563POX domain
PfamPF075265.9E-27299431IPR006563POX domain
PROSITE profilePS5007111.029472535IPR001356Homeobox domain
CDDcd000862.37E-10475536No hitNo description
SMARTSM003891.5E-5475539IPR001356Homeobox domain
SuperFamilySSF466893.25E-15477544IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-25478541IPR009057Homeodomain-like
PfamPF059201.3E-14492531IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MMENQMFNVT MDAMSRDSVV IDENSEHATM NSLVQSCSFD LNDQNRMIVP LHSTIQEPIN  60
GDVRNRTEII IPNAFYTCHR RNTDRDASLG CSSATANSEF QEHPISTASV ANFLAERNGL  120
PENLNNLAIL VPPIYSSEVL AEYISNGWSS SLNHRLAPSM NCGYDDVLGN IGGQWDIQKY  180
PATSDFGGKN SVRTEFQPYS SVGNMEPCGL ISADSASVAA DHSYSSSKFS NELSLTLATS  240
KPSVISGIHI PGQCSEMTCS GVARNSLNET RFASEQTSCN SEDLSLSFGS YRPPQFSKVI  300
LGSRYLCVIQ EILAQIASYS LENLDFQTTY PTAGAPDGVN IPFCSNSCSE RGSGFEAAME  360
PALQRRAVER KKAKLLALLQ MVDDRYNQCL DEIHTVISAF HAATELDPQI HARFALQTIS  420
VLYKNLRERI SNQFLAMGAH LNPACFRENE RSFETSFIQK QWALQQLKKK DHQLWRPQRG  480
LPERSVSVLR AWMFQNFLHP YPKDAEKHLL AVKSGLTRNQ VSNWFINARV RLWKPMIEEM  540
YSEMNRRKTN RNDQNTDRSH SSANNQRYNS N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-14481539563Homeobox protein Meis2
3k2a_B3e-14481539563Homeobox protein Meis2
4xrm_A3e-14481539563Homeobox protein Meis2
4xrm_B3e-14481539563Homeobox protein Meis2
4xrs_A2e-14481538158Homeobox protein Meis1
4xrs_B2e-14481538158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884442.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884442.10.0homeobox protein ATH1
RefseqXP_015884443.10.0homeobox protein ATH1
RefseqXP_024930234.10.0homeobox protein ATH1
RefseqXP_024930235.10.0homeobox protein ATH1
RefseqXP_024930236.10.0homeobox protein ATH1
SwissprotP487311e-112ATH1_ARATH; Homeobox protein ATH1
TrEMBLW9RE350.0W9RE35_9ROSA; Homeobox protein ATH1
STRINGXP_010097078.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-108homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]