PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884152.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 736aa    MW: 81275.6 Da    PI: 5.454
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-1970125156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_015884152.1  70 KKRYHRHTQRQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 125
                     688999***********************************************998 PP
2START221.33.1e-692594781206
                     HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ela +a++elv+ a+a+ep+Wv+     e +n+de+l++f+++ +      ++ea+r+s+vv+m++++lve+l+d++ qW++ +     +a+t++
  XP_015884152.1 259 ELAVAAMEELVRTAQAGEPLWVTGDnstETLNEDEYLRTFPRGIGpkplgLKSEASRESVVVIMNHTNLVEILMDVN-QWSTVFCdivsRAMTVD 352
                     57899*****************988889**************999********************************.******99999****** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++++    + R++++pSg+li++++ng+s+v+wvehv+
  XP_015884152.1 353 VLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDGTWAVVDVSLDNLRPNS----ISRSRRRPSGCLIQELPNGYSQVIWVEHVE 443
                     ***********************************************************98....79**************************** PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r +h+++++lv+sgla+gak+wvatl+rqce+
  XP_015884152.1 444 VDDRAVHNIYKPLVNSGLAFGAKRWVATLDRQCER 478
                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-2252125IPR009057Homeodomain-like
SuperFamilySSF466893.01E-1955127IPR009057Homeodomain-like
PROSITE profilePS5007116.8667127IPR001356Homeobox domain
SMARTSM003891.6E-1868131IPR001356Homeobox domain
CDDcd000861.38E-1870128No hitNo description
PfamPF000463.3E-1770125IPR001356Homeobox domain
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PROSITE profilePS5084845.113250481IPR002913START domain
SuperFamilySSF559612.38E-35251480No hitNo description
CDDcd088752.24E-116254477No hitNo description
SMARTSM002342.1E-70259478IPR002913START domain
PfamPF018522.4E-58260478IPR002913START domain
Gene3DG3DSA:3.30.530.201.8E-6354478IPR023393START-like domain
SuperFamilySSF559614.4E-25498729No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048825Biological Processcotyledon development
GO:0090627Biological Processplant epidermal cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MNKINQSESE EMFQPNMFET HQHLLDMTTH KSSEGEFGNI RDEDFETKSG TETMEAPSGD  60
DGDPNQRPKK KRYHRHTQRQ IQEMESFFKE CPHPDDKQRK ELSRELGLEP LQVKFWFQNK  120
RTQMKAQHER HENSILKAEN EKLRAENNRY KEALSNTTCP NCGGPAALGE MSFDEQHLRI  180
ENARLRDEID RISGIAAKYV GKPLSSYSHI SSHVSSRSLD LGVGNFGAQS GFVGEMYGSG  240
DFLRSVSVPS EADKPMIVEL AVAAMEELVR TAQAGEPLWV TGDNSTETLN EDEYLRTFPR  300
GIGPKPLGLK SEASRESVVV IMNHTNLVEI LMDVNQWSTV FCDIVSRAMT VDVLSTGVAG  360
NYNGALQVMT AEFQVPSPLV PTRENYFVRY CKQHSDGTWA VVDVSLDNLR PNSISRSRRR  420
PSGCLIQELP NGYSQVIWVE HVEVDDRAVH NIYKPLVNSG LAFGAKRWVA TLDRQCERLA  480
SSMANNIPAG DLCVITSPEG RRSMLKLAER MVRSFCTGVG ASTAHAWTTL SATGSDDVRV  540
MTRKSMDDPG RPPGIVLSAA TSFWLPVQPK RVFDLLRDEN SRNEWDILSN GGLVQEMAHI  600
ANGRDPGNCV SLLRVNSVNS SQSNMLILQE SCTDRTGSYV IYAPVDIVAM NMVLSGGDPD  660
YVALLPSGFA ILPDGPGLDA EAILEVGSGG SLLTVAFQIL VDSAPTAKLS LGSVSTVNNL  720
IKCTVERIRA AVTCET
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884152.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884145.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_015884152.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A061GGE70.0A0A061GGE7_THECC; Protodermal factor 2 isoform 1
STRINGEOY286240.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]