PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015883385.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 609aa    MW: 66414.2 Da    PI: 8.6601
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015883385.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013121139321
                     ETTTTEEESSHHHHHHHHH CS
         zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                     C+ Cgk F ++  L  H++
  XP_015883385.1 121 CKECGKAFQSWKALFGHMK 139
                     ******************7 PP
2zf-C2H212.10.00059519541123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C k+Fs+   L  H r+H
  XP_015883385.1 519 HECPICLKVFSSGQALGGHKRSH 541
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.24E-8931No hitNo description
PROSITE profilePS501579.12931IPR007087Zinc finger, C2H2
PfamPF139123.0E-5932IPR007087Zinc finger, C2H2
SMARTSM003550.38931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-8114141No hitNo description
PROSITE profilePS5015710.803119146IPR007087Zinc finger, C2H2
SMARTSM003550.043119141IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
PfamPF139124.1E-7121143IPR007087Zinc finger, C2H2
SuperFamilySSF576672.39E-6419441No hitNo description
PfamPF139126.2E-11419443IPR007087Zinc finger, C2H2
SMARTSM003550.14419441IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868419446IPR007087Zinc finger, C2H2
PROSITE patternPS000280421441IPR007087Zinc finger, C2H2
SuperFamilySSF576672.39E-6514541No hitNo description
PROSITE profilePS501579.411519541IPR007087Zinc finger, C2H2
PfamPF139122.1E-12519542IPR007087Zinc finger, C2H2
SMARTSM003550.084519541IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280521541IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MEENQEFKHV CKFCNKNFPC GRSLGGHMRS HLINNNNNNN NSAENDEKLI IISSRSNNKH  60
SSLNNGGIKI TASSPSPPST TCFEAAGVLH PGYGLRENPK KTWRIADSST EDTNSLPDKF  120
CKECGKAFQS WKALFGHMKC HSEKEKISNS FEEQDSWTSG NHHQKQLVMD SQSDNETTTT  180
APSRRRRSRR RTTRYLGTTA NSSSFSTIPN ASSSLNSDVA DEQEQEEIAM CLMMLSRDVG  240
GHWVGGGGGL KSVAESSDNS SVFLETPPVS KTSRITILDA KEATPKLKKL LNGKEPGKLN  300
SSLVLEGRQT EFCGVSSGIR KNLSRMNRTE SSIDGFFKKD KIIKSKIDEN EACFGKGTEL  360
DEAAELCGGA SANKLNNSNK RKIHDDYGPE LRSDSLKKLA NGSAFDCEIR KSSQKRSKFE  420
CTTCNKIFHS YQALGGHRAS HKKIKGCFAT KIESSENSIE FKTDISPEPV TAESKPIKNS  480
KIANNSIDNE MAGGGGAGGV DEEKADQASV RSRKISKGHE CPICLKVFSS GQALGGHKRS  540
HLIGGGSEAK SNQTIVIQKP IPEIRDLLDL NLPAPVEEEN NGGHVASLKP WWVGNGSHKH  600
EGLVGLISN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015883385.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015883385.10.0formin-J-like
TrEMBLA0A061FWS60.0A0A061FWS6_THECC; C2H2-like zinc finger protein, putative
STRINGEOY220000.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.16e-31C2H2-like zinc finger protein