PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882939.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 357aa    MW: 40554.6 Da    PI: 8.8128
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.82.1e-1634135280
        trihelix   2 WtkqevlaLiearr.......................emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                     Wt +e++ Liea++                        +++++r+gk ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e+k  +
  XP_015882939.1  34 WTVSETMILIEAKKmdderrlmkrisssssnngdqntHDQSSSRSGKPAELRWKWVEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVRDYERKLVD 128
                     **************999998888888888888888766666666778*********************************************999 PP

        trihelix  74 essstcp 80 
                     e ss + 
  XP_015882939.1 129 EGSSYWN 135
                     9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.48126113IPR017877Myb-like domain
PfamPF138374.2E-1133125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MRLYFCMHIY MFDVFDRVVT VIYSVMRDYR KGNWTVSETM ILIEAKKMDD ERRLMKRISS  60
SSSNNGDQNT HDQSSSRSGK PAELRWKWVE DYCWRKGCMR SQNQCNDKWD NLMRDYKKVR  120
DYERKLVDEG SSYWNIEKNE RKERNLPTNM LPQIYEALVE VVEKKAQQRV NVMALTATTT  180
TTGGGGTTSS VIVVPSSSPS PNVLSYVHHH QLSLPTPIPS PLMPPPLMLQ HHHISAPPSM  240
AAAAAALPLP SPHIAAAPIL PASQTQQPLS LPYSHPLPTV VQILIQVSLQ SHQQKGGEEG  300
VEVEVEREQA LALLVQQQPQ QQVMINKWGV LSPEVLPSLL KHLKPVRREK IEGTEMF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882939.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882939.10.0uncharacterized protein LOC107418735 isoform X4
TrEMBLF6HIS48e-74F6HIS4_VITVI; Uncharacterized protein
TrEMBLW9R7D12e-73W9R7D1_9ROSA; Uncharacterized protein
STRINGVIT_10s0042g00940.t011e-74(Vitis vinifera)
STRINGXP_010098471.14e-74(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-56Trihelix family protein