PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015882713.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 283aa MW: 30155.3 Da PI: 5.2359

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015882713.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.6e-11	164	211	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq XP_015882713.1 164 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 211 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.83E-10	158	215	No hit	No description
SuperFamily	SSF47459	6.02E-18	158	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-18	160	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	160	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-8	164	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	166	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MDPPLINESS FSAANPSSYS LAEIWPFGGE TGSGGGVLGL RMGNLGQSLG GFGESSANRD 60 GSVEESTVTE QSGGGGGGGR KRRDVSSEDE SSKMVSTSSA NDLNSNGKRM KLAGSKDGNG 120 VSKDEVEASS VADNKPAEQS SKPSEPPKQD YIHVRARRGQ ATDSHSLAER ARREKISERM 180 KILQDLVPGC NKVIGKALVL DEIINYIQSL QHQVEFLSMK LEAVNSRMNI NPSIEGFPSK 240 DLGTQPFDAT GLLFGSQAAR EYAQGSQPEW LHMQVGGSYE RAT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015882713.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882713.1	0.0	transcription factor bHLH79 isoform X2
Swissprot	Q9LV17	9e-94	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A2I4FIZ4	1e-163	A0A2I4FIZ4_JUGRE; transcription factor bHLH79-like isoform X1
STRING	XP_006476705.1	1e-157	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	3e-81	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]