PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 260aa MW: 29316.5 Da PI: 8.8308

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015882202.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	7.1e-06	118	137	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ XP_015882202.1 118 FSCHVCFKTFNRYNNLQMHM 137 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.12E-5	111	140	No hit	No description
PROSITE profile	PS50157	10.055	118	145	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.9E-4	118	137	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	120	140	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEPPETSSAS SPLLSSTNLD DIQPLNLFPN DNQVDHLQPL PLISCLLRSP PQLSSNENPK 60 ACSGELDENV TVALHIGLPE YSYSPGMSNP SEKGDINMAS EKYWIPTPEQ ILIGFTHFSC 120 HVCFKTFNRY NNLQMHMWGH GSQYRRGPES LKGSQPRAML GIPCYCCAEG CKNNINHPRA 180 KPLKDFRTLQ THYKRKHGMK HFTCRKCGKL LAVKGDWRTH EKNCGKRWLC ICGSDFKHKR 240 SLKDHVKAFG SGHSPFPPSI

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015882202.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882202.1	0.0	protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	1e-111	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	W9R7W2	1e-139	W9R7W2_9ROSA; Protein TRANSPARENT TESTA 1
STRING	XP_010098614.1	1e-140	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-113	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]