PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015882006.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

MYB_related

Protein Properties

Length: 459aa MW: 50571.3 Da PI: 5.221

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015882006.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	5.9e-17	50	94	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+ XP_015882006.1 50 REKWTEEEHQKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 94 789*****************.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.72E-16	44	97	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.635	45	99	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-10	46	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-16	48	97	IPR006447	Myb domain, plants
SMART	SM00717	2.8E-13	49	97	IPR001005	SANT/Myb domain
Pfam	PF00249	8.9E-15	50	93	IPR001005	SANT/Myb domain
CDD	cd00167	2.30E-11	52	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MGSNTTDVAG NFNSMGDAKS GSEILVKEMY SIGNDQAPKA RKPYTIKKQR EKWTEEEHQK 60 FLEALKLYGR GWRQIEEHVG TKTAVQIRSH AQKFFSKVVR GSTGSSEDSM KPIEIPPPRP 120 KRKPMHPYPR KSVDFLKGTS VSNQTERSSS PEEGTKSPTS VLYTLGSEAL DSPASDQLSK 180 SSPSSTLCTT DMHSGSLSPL EKENDYTTSN SCAEEGKGSL PILENVSCTK FEPGSKETLC 240 AEEEAAEMSA STSIKLFGRT VLLVDPQKES PPGAEDCKVS TSKTEQADSD IEDEKVVQTL 300 PSDKLDTCLS LSGVVGNWNP LPCGAPIIQM ENQKESPNSV EGDPPRLWWT LYQLPFYSLP 360 GYNQTAVETV SSCVDERMKD KERSCSDSNE GSFGVENVGE KNVETVDSSC PEHRFEGRVS 420 PCSSRKGFVP YKRCLAERGM DSPVRVSEER DRQRTRVCS

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MGSNTTDVAG NFNSMGDAKS GSEILVKEMY SIGNDQAPKA RKPYTIKKQR EKWTEEEHQK  60
FLEALKLYGR GWRQIEEHVG TKTAVQIRSH AQKFFSKVVR GSTGSSEDSM KPIEIPPPRP  120
KRKPMHPYPR KSVDFLKGTS VSNQTERSSS PEEGTKSPTS VLYTLGSEAL DSPASDQLSK  180
SSPSSTLCTT DMHSGSLSPL EKENDYTTSN SCAEEGKGSL PILENVSCTK FEPGSKETLC  240
AEEEAAEMSA STSIKLFGRT VLLVDPQKES PPGAEDCKVS TSKTEQADSD IEDEKVVQTL  300
PSDKLDTCLS LSGVVGNWNP LPCGAPIIQM ENQKESPNSV EGDPPRLWWT LYQLPFYSLP  360
GYNQTAVETV SSCVDERMKD KERSCSDSNE GSFGVENVGE KNVETVDSSC PEHRFEGRVS  420
PCSSRKGFVP YKRCLAERGM DSPVRVSEER DRQRTRVCS

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015882006.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024929608.1	0.0	histone H2A deubiquitinase MYSM1-like isoform X2
Swissprot	F4KGY6	5e-50	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	A0A2P5CQF6	1e-160	A0A2P5CQF6_TREOI; GAMYB transcription factor
STRING	XP_009355963.1	1e-139	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	5e-46	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]