PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015882005.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

MYB_related

Protein Properties

Length: 468aa MW: 51546.4 Da PI: 4.9988

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015882005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	6e-17	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+ XP_015882005.1 59 REKWTEEEHQKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 103 789*****************.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-16	53	106	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.635	54	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.0E-10	55	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-16	57	106	IPR006447	Myb domain, plants
SMART	SM00717	2.8E-13	58	106	IPR001005	SANT/Myb domain
Pfam	PF00249	9.2E-15	59	102	IPR001005	SANT/Myb domain
CDD	cd00167	2.40E-11	61	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MVVEDQSEGM GSNTTDVAGN FNSMGDAKSG SEILVKEMYS IGNDQAPKAR KPYTIKKQRE 60 KWTEEEHQKF LEALKLYGRG WRQIEEHVGT KTAVQIRSHA QKFFSKVVRG STGSSEDSMK 120 PIEIPPPRPK RKPMHPYPRK SVDFLKGTSV SNQTERSSSP EEGTKSPTSV LYTLGSEALD 180 SPASDQLSKS SPSSTLCTTD MHSGSLSPLE KENDYTTSNS CAEEGKGSLP ILENVSCTKF 240 EPGSKETLCA EEEAAEMSAS TSIKLFGRTV LLVDPQKESP PGAEDCKVST SKTEQADSDI 300 EDEKVVQTLP SDKLDTCLSL SGVVGNWNPL PCGAPIIQME NQKESPNSVE GDPPRLWWTL 360 YQLPFYSLPG YNQTAVETVS SCVDERMKDK ERSCSDSNEG SFGVENVGEK NVETVDSSCP 420 EHRFEGRVSP CSSRKGFVPY KRCLAERGMD SPVRVSEERD RQRTRVCS

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MVVEDQSEGM GSNTTDVAGN FNSMGDAKSG SEILVKEMYS IGNDQAPKAR KPYTIKKQRE  60
KWTEEEHQKF LEALKLYGRG WRQIEEHVGT KTAVQIRSHA QKFFSKVVRG STGSSEDSMK  120
PIEIPPPRPK RKPMHPYPRK SVDFLKGTSV SNQTERSSSP EEGTKSPTSV LYTLGSEALD  180
SPASDQLSKS SPSSTLCTTD MHSGSLSPLE KENDYTTSNS CAEEGKGSLP ILENVSCTKF  240
EPGSKETLCA EEEAAEMSAS TSIKLFGRTV LLVDPQKESP PGAEDCKVST SKTEQADSDI  300
EDEKVVQTLP SDKLDTCLSL SGVVGNWNPL PCGAPIIQME NQKESPNSVE GDPPRLWWTL  360
YQLPFYSLPG YNQTAVETVS SCVDERMKDK ERSCSDSNEG SFGVENVGEK NVETVDSSCP  420
EHRFEGRVSP CSSRKGFVPY KRCLAERGMD SPVRVSEERD RQRTRVCS

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015882005.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882005.1	0.0	protein REVEILLE 7-like isoform X1
Swissprot	F4KGY6	6e-50	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	A0A2P5CQF6	1e-165	A0A2P5CQF6_TREOI; GAMYB transcription factor
STRING	XP_009355963.1	1e-142	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7313	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	5e-46	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]