 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_015882005.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
| Family |
MYB_related |
| Protein Properties |
Length: 468aa MW: 51546.4 Da PI: 4.9988 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_015882005.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.4 | 6e-17 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+
XP_015882005.1 59 REKWTEEEHQKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 103
789*******************.*********.************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 468 aa
Download sequence Send
to blast |
MVVEDQSEGM GSNTTDVAGN FNSMGDAKSG SEILVKEMYS IGNDQAPKAR KPYTIKKQRE 60
KWTEEEHQKF LEALKLYGRG WRQIEEHVGT KTAVQIRSHA QKFFSKVVRG STGSSEDSMK 120
PIEIPPPRPK RKPMHPYPRK SVDFLKGTSV SNQTERSSSP EEGTKSPTSV LYTLGSEALD 180
SPASDQLSKS SPSSTLCTTD MHSGSLSPLE KENDYTTSNS CAEEGKGSLP ILENVSCTKF 240
EPGSKETLCA EEEAAEMSAS TSIKLFGRTV LLVDPQKESP PGAEDCKVST SKTEQADSDI 300
EDEKVVQTLP SDKLDTCLSL SGVVGNWNPL PCGAPIIQME NQKESPNSVE GDPPRLWWTL 360
YQLPFYSLPG YNQTAVETVS SCVDERMKDK ERSCSDSNEG SFGVENVGEK NVETVDSSCP 420
EHRFEGRVSP CSSRKGFVPY KRCLAERGMD SPVRVSEERD RQRTRVCS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
