PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881991.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 714aa    MW: 78989.7 Da    PI: 6.754
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881991.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.6e-202681156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t++q++ Le++F+++++p++++r +L+++l+L  rq+k+WFqNrR+++k
  XP_015881991.1 26 KKRYHRHTAHQIQKLEAMFKECPHPDEKQRMQLSRELSLAPRQIKFWFQNRRTQMK 81
                    688999***********************************************998 PP
2START175.72.9e-552234462205
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     +a  a++el+++ + +ep+W+kss    + +n d + + f++ ++      +++ea+r sgvv+m++  lv  ++d++ +W e ++    ka t+
  XP_015881991.1 223 IAANATEELLRLLQTNEPLWMKSSvdgrDVLNLDSYERLFPRPNShlknpnFRIEASRYSGVVFMNSLALVDMFMDVN-KWVELFPtiisKARTI 316
                     577899******************99998899999999998877799*******************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     evissg      g lqlm+ +lq+lsplvp R+f f+Ry++q ++  w+ivdvS d ++++   ss  R+++lpSg+li++++ g+skv w+eh+
  XP_015881991.1 317 EVISSGmmgshsGSLQLMYEDLQVLSPLVPtREFFFLRYCQQIEQSLWAIVDVSYDFPRDNH-FSSQYRSHRLPSGCLIQDMPSGYSKVSWLEHI 410
                     *************************************************************9.7999**************************** PP

                     E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqce 205
                     + ++++p h l+r lv sgla+ga +w+atlqr c 
  XP_015881991.1 411 EIEDKTPiHRLYRELVYSGLAFGAERWLATLQRMCD 446
                     *********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.63E-201083IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-231385IPR009057Homeodomain-like
PROSITE profilePS5007117.4752383IPR001356Homeobox domain
SMARTSM003893.4E-192487IPR001356Homeobox domain
CDDcd000862.76E-182584No hitNo description
PfamPF000461.2E-172681IPR001356Homeobox domain
PROSITE patternPS0002705881IPR017970Homeobox, conserved site
SuperFamilySSF559611.37E-36213448No hitNo description
PROSITE profilePS5084852.88213450IPR002913START domain
CDDcd088751.81E-118217445No hitNo description
SMARTSM002341.1E-49222447IPR002913START domain
PfamPF018529.5E-48223446IPR002913START domain
Gene3DG3DSA:3.30.530.204.7E-6271417IPR023393START-like domain
SuperFamilySSF559616.23E-25469706No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MEFGSGGGGG SGSGGDHDSS DPQGRKKRYH RHTAHQIQKL EAMFKECPHP DEKQRMQLSR  60
ELSLAPRQIK FWFQNRRTQM KAQHERANNC TLRAENDKIR CENIAIREAL KNVICPSCGG  120
PPINEDSYFD EQKLRMENAQ LKEELDRVSS IAAKYIGRPI SQLPPVQPVH ISSLDLSMGS  180
FGGHGLGGPS LDLDLHASSS TTANLPFPPM VITEMDKSLM TDIAANATEE LLRLLQTNEP  240
LWMKSSVDGR DVLNLDSYER LFPRPNSHLK NPNFRIEASR YSGVVFMNSL ALVDMFMDVN  300
KWVELFPTII SKARTIEVIS SGMMGSHSGS LQLMYEDLQV LSPLVPTREF FFLRYCQQIE  360
QSLWAIVDVS YDFPRDNHFS SQYRSHRLPS GCLIQDMPSG YSKVSWLEHI EIEDKTPIHR  420
LYRELVYSGL AFGAERWLAT LQRMCDRFAC LMNSGTSRDL GGVIPSADGK RSMMKLAQRM  480
VNNFCASINP SNGHQWTTLS GMNDAGVKVT VHKCTDPGQP NGMILSAATT IWLPIPPQDV  540
FNFFKDERTR SQWDVLSNGN AVQEVAHIAN GSHPGNCISV LRAFNTSQNN MLILQESCID  600
SSGSLVVYCP VDLPAINIAM SGEDPSYIPL LPSGFTITPD GRPDQGGGDG ASTSSNTHGN  660
LLGRSSGSLI TVAFQILISS LPNAKMNMES VTTVNNLIGT TIQQIKAALN CPSS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881991.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881991.10.0homeobox-leucine zipper protein HDG11-like
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLA0A2N9ELU80.0A0A2N9ELU8_FAGSY; Uncharacterized protein
STRINGXP_010099679.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Cai XT,Xu P,Wang Y,Xiang CB
    Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
    J Integr Plant Biol, 2015. 57(12): p. 1017-30
    [PMID:25752924]
  5. Yu LH, et al.
    Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
    Plant Biotechnol. J., 2016. 14(1): p. 72-84
    [PMID:25879154]
  6. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  7. Liu Y, et al.
    Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza.
    Protoplasma, 2017. 254(4): p. 1617-1625
    [PMID:27915455]
  8. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  9. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  10. Zheng G, et al.
    Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.).
    Front Plant Sci, 2017. 8: p. 2125
    [PMID:29326737]