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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
XP_015881712.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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| Family |
TCP |
| Protein Properties |
Length: 284aa MW: 30493.2 Da PI: 9.1391 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_015881712.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 124.7 | 9.9e-39 | 51 | 138 | 2 | 88 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88
a+k+ +++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ ++ss+s+++ns s+
XP_015881712.1 51 APKRNSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaLTGSSVSEQGNSVSS 138
789******************************************************************9887666666666644433 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MEPKGSNYNP QEVPTLLGHS PKADMAENKP AEIKDFQIMI ANKEDNKKQL APKRNSNKDR 60
HKKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIQWL LQQAEPSIIA ATGTGTIPAS 120
ALALTGSSVS EQGNSVSSAL HTKMEELGPG GIGSVGRANW AFMSGNLGRS QLPSGVWPSL 180
SGVGSGFIQN PGQSTSNFAS ENLNMLPKFG FHGFDFPGMN LGSMSFPTIL SGNNQQVPGL 240
ELGLSQDGHF RVINSEALSQ LQQQMGQRPQ QESPEKDDSQ GSRG
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
| Publications
? help Back to Top |
- Zhu P, et al.
Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
[PMID:27708161] - Wu JF, et al.
LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
Nat Commun, 2016. 7: p. 13181
[PMID:27734958] - Guan P, et al.
Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
[PMID:28202720] - Guan P
Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
Front Plant Sci, 2017. 8: p. 1697
[PMID:29033968] - Zhang N, et al.
MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
Plant J., 2018. 93(1): p. 66-78
[PMID:29086441] - Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
Plant Physiol., 2018. 176(2): p. 1694-1708
[PMID:29133375] - Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
Microbes Environ., 2017. 32(4): p. 314-323
[PMID:29187692]
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