PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015881546.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Protein Properties

Length: 108aa MW: 12657.6 Da PI: 10.4649

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015881546.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.9	2.7e-11	5	104	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ ++s+ + + + +p kf++++ + ++ l+++d +gr++ + l+ r g+ ++ +kGW +Fv++ +L++gD++ F ++ ++f XP_015881546.1 5 FEKQVKKSHISDK--FPVPTKFVNNNRLTDFVHVRLMVTDvDTGREYAFVLSTRSELGEylkpVFQAKGWLKFVRDRHLQTGDTIRFWIESGTGF 97 7788855555544..799***999666666778999998899***8777766655555556******************97765666 PP ..EEEEE- CS B3 91 elvvkvfr 98 ++++vf XP_015881546.1 98 -YKIQVFP 104 .8888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	8.727	3	106	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.34E-12	4	103	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.4E-11	4	95	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.15E-10	5	104	No hit	No description
Pfam	PF02362	3.1E-8	5	104	IPR003340	B3 DNA binding domain
SMART	SM01019	3.0E-4	5	106	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MANVFEKQVK KSHISDKFPV PTKFVNNNRL TDFVHVRLMV TDVDTGREYA FVLSTRSELG 60 EYLKPVFQAK GWLKFVRDRH LQTGDTIRFW IESGTGFYKI QVFPRIST

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015881546.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17870	2	4