PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015881527.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | FAR1 | ||||||||
Protein Properties | Length: 195aa MW: 22633.8 Da PI: 10.5265 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 22.3 | 4.3e-07 | 35 | 113 | 5 | 89 |
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++A + G+ v+++ s+k t+ C + g +++ k+ ++ ++r++++ t+C +++ kk+ d+ w ++ + HnHe XP_015881527.1 35 DFALTQGYMVSIRDSSKD------RYVTLACDRGGVYRKRLKTgENLRKRKSESRLTNCSFEVVGKKD-DDIWILSIKNGVHNHEA 113 577777787777776666......5789********99999994455566666777999999988777.***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-5 | 35 | 113 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MEAQEHNEHT QEKKMLPPPV GTFQTREELI KHVRDFALTQ GYMVSIRDSS KDRYVTLACD 60 RGGVYRKRLK TGENLRKRKS ESRLTNCSFE VVGKKDDDIW ILSIKNGVHN HEASNDTSDH 120 PSCRRFSEEE VKLIRELTAA GKRPRQILKA LRQKNPNLVS DSRNVYNVKA KIRREMVSAQ 180 RNSITTFMGR HHSFL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015881527.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024928609.1 | 1e-124 | probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2 | ||||
TrEMBL | A0A061E3B5 | 1e-104 | A0A061E3B5_THECC; Uncharacterized protein (Fragment) | ||||
STRING | EOX99450 | 1e-105 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13278 | 3 | 4 |