PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881324.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 248aa    MW: 27458.9 Da    PI: 7.5585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.18.6e-1567113354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+E+rRR+riN  f++Lr+l+P a     kK++Ka+ L +++e+ k+L
  XP_015881324.1  67 KNHSEAEKRRRARINAHFDTLRSLIPGA-----KKMDKASLLAEVIEHFKEL 113
                     58*************************9.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.5264113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.46E-1367116No hitNo description
PfamPF000101.6E-1267113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1568122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-1568121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-1470119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.07E-6149223No hitNo description
PROSITE profilePS516719.048149228IPR002912ACT domain
Gene3DG3DSA:3.30.70.2601.3E-7149195No hitNo description
CDDcd048733.86E-11150222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEPFSSISGV YNSVFESVND LVNSGRRYGS ASSSSLVLDS SRGELVEAPV KSGRKGVSTE  60
RTIEALKNHS EAEKRRRARI NAHFDTLRSL IPGAKKMDKA SLLAEVIEHF KELKRKAAEA  120
SEDSVIPNDT DEVKVEQDDE LEGKPYSIRV SLSCNYRPGL LSDLRQALDD LHLIILKAEI  180
ATLGGRMKNV FVITSCKEEN TKNGEVSQFH ASSICQTLRS VLNRFSDSEE FLGTTVSNKR  240
IRASMFSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881324.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881324.10.0transcription factor bHLH30-like
TrEMBLA0A2P5FF431e-110A0A2P5FF43_TREOI; Basic helix-loop-helix transcription factor
STRINGPOPTR_0019s11870.18e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-30bHLH family protein