PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015881257.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 20374.9 Da PI: 8.2973 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 33.2 | 1.4e-10 | 1 | 52 | 45 | 96 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 ++k+++ee+r++a++slv+eA++r++dPv G ++ ++k+ ++l+ k+e ++ XP_015881257.1 1 MVKNIREEDRRRAVDSLVWEACCRQKDPVLGPYSEYKKVYEELKMYKSEENQ 52 689999**************************************99988665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 8.985 | 1 | 57 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.0E-8 | 1 | 51 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 181 aa Download sequence Send to blast |
MVKNIREEDR RRAVDSLVWE ACCRQKDPVL GPYSEYKKVY EELKMYKSEE NQMLQLTGQK 60 NTISYKSLSS LVARNNGGHG ISSNGTGVGG VVSSNGFNYF HESGNVLVEP STFGYPSNYM 120 QLCSEKTRGE KNIDSVVPLQ QHLVSGGFNQ QYYHSGNLVC YYLMNHTILL SHFLASNIKS 180 L |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015881257.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015881257.2 | 1e-112 | LOB domain-containing protein 2-like | ||||
Refseq | XP_015901276.2 | 1e-112 | LOB domain-containing protein 2-like | ||||
TrEMBL | A0A2P5E7R6 | 3e-41 | A0A2P5E7R6_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | XP_008229134.1 | 9e-35 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12722 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G06280.1 | 6e-17 | LOB domain-containing protein 2 |