PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881131.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 780aa    MW: 85827.5 Da    PI: 6.5475
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.8e-20110165156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_015881131.1 110 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 165
                     688999***********************************************999 PP
2START223.66.1e-703005201206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+++a+ ++p+W++s     + +n+de++++f+++ +     ++ ea+r+++vv+m++ +lve+l+d++ qW++ +     +a+tl
  XP_015881131.1 300 ELAVAAMEELIRMAQMGDPLWMTSLdgttSVLNEDEYIRTFPRGIGpkptgFKCEASRETAVVIMNHINLVEILMDVG-QWSTVFSgivsRAMTL 393
                     57899**********************9999************999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p     vR++++pSg+li++++ng+skvtwvehv
  XP_015881131.1 394 EVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDNLRPSPA----VRCRRRPSGCLIQEMPNGYSKVTWVEHV 484
                     ************************************************************995....**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h l++++v+ g a+gak+wvatl+rqce+
  XP_015881131.1 485 EVDDRGVHDLYKQVVNCGNAFGAKRWVATLDRQCER 520
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-2289165IPR009057Homeodomain-like
SuperFamilySSF466891.13E-1996167IPR009057Homeodomain-like
PROSITE profilePS5007116.957107167IPR001356Homeobox domain
SMARTSM003894.8E-20108171IPR001356Homeobox domain
CDDcd000862.83E-19110168No hitNo description
PfamPF000464.4E-18110165IPR001356Homeobox domain
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
PROSITE profilePS5084844.77291523IPR002913START domain
SuperFamilySSF559613.36E-37292522No hitNo description
CDDcd088752.77E-128295519No hitNo description
SMARTSM002341.2E-66300520IPR002913START domain
PfamPF018528.6E-59301520IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-6393512IPR023393START-like domain
SuperFamilySSF559612.69E-23539772No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MCKISCLEPK KKKKKSVFNL LPFEWEIFHS VCFRLKNHKP LFENLKRSVD MFQPNMMEGH  60
LHPLDMTQNT SESDIARIGA RDDDFDSATK SGSENHEGAS GDDQDPRPKK KRYHRHTQHQ  120
IQEMEAFFKE CPHPDDKQRK ELSRELGLEP LQVKFWFQNK RTQMKTQHER HENTQLRTEN  180
DKLRADNMRY REALSNASCP NCGGPTAIGE MSFDEHHLRL ENSRLREEID RISAIAAKYV  240
GKPVVNYPLL SPPVPSRPLE LGVGNFGGHQ AGMGGEMYGA GDLLRSINAP SDADKPMIIE  300
LAVAAMEELI RMAQMGDPLW MTSLDGTTSV LNEDEYIRTF PRGIGPKPTG FKCEASRETA  360
VVIMNHINLV EILMDVGQWS TVFSGIVSRA MTLEVLSTGV AGNYNGALQV MTAEFQVPSP  420
LVPTRESYYV RYCKQHADGT WAVVDVSLDN LRPSPAVRCR RRPSGCLIQE MPNGYSKVTW  480
VEHVEVDDRG VHDLYKQVVN CGNAFGAKRW VATLDRQCER LASAMATNIP TGDVGVITNQ  540
EGRKSMLKLA ERMVISFCAG VSASTTHTWT TLSGTGAEDV RVMTRKSVDD PGRPPGIVLS  600
AATSFWLPVP PKRVFDFLRD ENSRSEWDIL SNGGAVQEMA HIANGRDTGN CVSLLRSANS  660
SQSNMLILQE SCTDSTASFV IYAPVDIVAM NVVLNGGDPD YVALLPSGFA ILPDGTSIHG  720
GGGGGIGETG SGGSLLTVAF QILVDSVPTA KLSLGSVATV NQLIACTVER IKASLSCDNA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881131.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881131.20.0homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A2I4DP910.0A0A2I4DP91_JUGRE; homeobox-leucine zipper protein HDG2-like isoform X2
STRINGXP_006469695.10.0(Citrus sinensis)
STRINGXP_006447537.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2