PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881066.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 130aa    MW: 14762.3 Da    PI: 10.3241
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881066.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09750755
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +  r+RR+++ ++   L++llP++     kK++ a++Le+A +Y+k Lq
  XP_015881066.1  7 ALARQRRQKLSDKTRYLQKLLPWD-----KKMNIATMLEEAYKYVKFLQ 50
                    567********************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.1149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-7453No hitNo description
SuperFamilySSF474595.1E-11660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-7655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6750IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-10757IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MIPRSSALAR QRRQKLSDKT RYLQKLLPWD KKMNIATMLE EAYKYVKFLQ AQLTALHSMP  60
FHSSIPIPVR GGDLGSVFGI LGRLNRNQLL QVLVNSPVAQ SLLCSQGCCV FSVEQLDMLK  120
KTHNQKDGDY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881066.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881066.13e-93transcription factor bHLH117-like
TrEMBLW9SRS03e-49W9SRS0_9ROSA; Uncharacterized protein
STRINGXP_010109560.15e-50(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.19e-24bHLH family protein