PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881000.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 359aa    MW: 40269.3 Da    PI: 5.2156
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-091459148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv+++++ G + W +     g+ R++k+c++rw +yl
   XP_015881000.1 14 KGPWTPEEDLKLVNYIQK-GYR-WLLLIYLTGLQRCGKSCRLRWTNYL 59
                     79*************987.668.***999999**************97 PP
2Myb_DNA-binding54.52.7e-1765109147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
   XP_015881000.1  65 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 109
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-18562IPR009057Homeodomain-like
PROSITE profilePS5129411.043959IPR017930Myb domain
SuperFamilySSF466893.14E-2511106IPR009057Homeodomain-like
SMARTSM007174.0E-61361IPR001005SANT/Myb domain
PfamPF002494.6E-81459IPR001005SANT/Myb domain
PROSITE profilePS5129425.25560114IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2663114IPR009057Homeodomain-like
SMARTSM007171.8E-1664112IPR001005SANT/Myb domain
PfamPF002491.2E-1565109IPR001005SANT/Myb domain
CDDcd001672.24E-1267110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGRAPCCDKN GLKKGPWTPE EDLKLVNYIQ KGYRWLLLIY LTGLQRCGKS CRLRWTNYLR  60
PDIKRGRFSF EEEETIIQLH SILGNKWSAI AARLPGRTDN EIKNYWNTHI RKRLLRMGID  120
PVTHAPRLDF LDLSSILGSS LCNPTLVNLS TLLGGSQALF NPDFLRLAAT LMSLKQENNN  180
PDLLTQNFNE NINNQLFSAQ LPNNQFQTQL SQQGFSTEMV KQLLMQANAD GLLSNMGTNF  240
ECPTNTATTT TPQNNIGIAN SGLSENDFAS QQPSYLHCGS NPLVGDLPEN LHFQSVNDGG  300
KKDFDFDSTL STPLSSPTPL NSSSTYINSS STTEDEKESY CSDFFKFEIP EGLDINEFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28121145108B-MYB
1mse_C4e-28121142105C-Myb DNA-Binding Domain
1msf_C4e-28121142105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881000.10.0transcription factor MYB102-like
SwissprotQ9LDR83e-97MY102_ARATH; Transcription factor MYB102
TrEMBLA0A2I4HLG91e-138A0A2I4HLG9_JUGRE; transcription factor MYB39-like
TrEMBLA0A2N9GME61e-138A0A2N9GME6_FAGSY; Uncharacterized protein
STRINGXP_010095853.11e-139(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.15e-94MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]