PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880983.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 236aa    MW: 27093.6 Da    PI: 4.7321
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-183074147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+ T+eE+e ++++++ lG++ W++Ia+ ++ gRt++++k++w++ 
   XP_015880983.1 30 RGNYTKEEEETIIRLHQSLGNR-WSAIAAQLP-GRTDNEVKNHWHTN 74
                     899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.193124IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-111035IPR009057Homeodomain-like
SuperFamilySSF466893.34E-231083IPR009057Homeodomain-like
PROSITE profilePS5129425.5062579IPR017930Myb domain
SMARTSM007175.8E-172977IPR001005SANT/Myb domain
PfamPF002492.8E-163074IPR001005SANT/Myb domain
CDDcd001671.07E-123275No hitNo description
Gene3DG3DSA:1.10.10.602.8E-223679IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MQFFFFTGLQ RCGKSCRLRW MNYLRPNIKR GNYTKEEEET IIRLHQSLGN RWSAIAAQLP  60
GRTDNEVKNH WHTNLKKRVQ HNYVTHGLEI YSNNSSNDYN IPSQEKTKNN TISEHNNSAL  120
EDQAALQILE SSTLSPGQTY SSSDEVSTIS TDTTFTETST TNFAADDSNV SAYNSLETFS  180
EFSGNFWTEP FLADNSYIPS EFLTPITDLE IFSPLFDGSS LSSTHEYYME HEVLFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21117940108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880983.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880983.11e-176transcription factor WER-like isoform X1
TrEMBLA0A2N9J0C43e-75A0A2N9J0C4_FAGSY; Uncharacterized protein
STRINGXP_010095861.15e-73(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-41myb domain protein 14