PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015880908.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 837aa MW: 96556 Da PI: 7.0277

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015880908.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.4	1e-27	74	161	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ ++r+ ++++t+Cka+++vk+++dgkw ++++ +eHnHel p XP_015880908.1 74 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDGG---SSRRPSVKKTDCKASMHVKRRSDGKWIIHEFIKEHNHELLP 161 5**************************************999888...7788889*****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-25	74	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.3E-27	281	374	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.235	561	597	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.8E-5	570	595	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.7E-8	572	599	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence Send to blast
MDRSQNPVEN AMNSQDNVNA GGVNENMIVV MDGVHNRDGG LLSSPKRDVV MFEGDTDFEP 60 CNGIEFESHE AAYSFYQEYA KSMGFTTSIK NSRRSKKSKE FIDAKFACSR YGVTPESDGG 120 SSRRPSVKKT DCKASMHVKR RSDGKWIIHE FIKEHNHELL PALAYHFRIH RNVKLVEKNN 180 IDILHAVSER TRKMYVEMSR QSGGYQNIGF VRAETDFQFD KGRYLGLEEG DAQVLLEYFK 240 RIQKENPNFF YAIDLNEEQR VRNLFWVDAK SRSDYASFSD VVSFDTSYVK INDKLPFAPF 300 IGVNHHFQSM LLGCAMVADE TKSTFVWLMK TWLRAMGGQA PKVIITDQGK ALKAAIEEVF 360 PNARHCFSLW HILEKIPETL AHAIKRHENF LNKFNKCIFK SWTDDQFDMR WWKMITRFEL 420 QDDEWIQSLY EDRKKWVPTY MEDTFLAGMS TNQRSESMNS FFDKYIHKKI TLKEFVKQYG 480 SILQNRYEEE AIADFDTWHK QPALKSPSPW EKQMSTVYTH AVFKKFQVEV LGVVGCQPKK 540 ESEDGATITF RVQDCEKDEF FFVLWNETKS EVSCFCRLFE YKGFLCRHAL IVLQICGLSS 600 IPPHYILKRW TKDAKGRTLM AEGTERTKTR VQRYNDLCKH AIELSEEGSL SEETYNIAFR 660 ALVEALRNCV DVNNHNNNAV EYSTNVHGVR EMEEENQGSL VVKTSRKKNT NKKRKVQADQ 720 DVVLVEEQDT LQQMDNLSSD SITLNGYYGA QQNVQGLVQL NLMEPPHDSY YVNQQSIQGL 780 GQLNSIAPGP DSYFGAQQGI HALGQLDFRP PTSFGYSLQD EPHLRSAQLH GNASRHT

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence Send to blast

MDRSQNPVEN AMNSQDNVNA GGVNENMIVV MDGVHNRDGG LLSSPKRDVV MFEGDTDFEP  60
CNGIEFESHE AAYSFYQEYA KSMGFTTSIK NSRRSKKSKE FIDAKFACSR YGVTPESDGG  120
SSRRPSVKKT DCKASMHVKR RSDGKWIIHE FIKEHNHELL PALAYHFRIH RNVKLVEKNN  180
IDILHAVSER TRKMYVEMSR QSGGYQNIGF VRAETDFQFD KGRYLGLEEG DAQVLLEYFK  240
RIQKENPNFF YAIDLNEEQR VRNLFWVDAK SRSDYASFSD VVSFDTSYVK INDKLPFAPF  300
IGVNHHFQSM LLGCAMVADE TKSTFVWLMK TWLRAMGGQA PKVIITDQGK ALKAAIEEVF  360
PNARHCFSLW HILEKIPETL AHAIKRHENF LNKFNKCIFK SWTDDQFDMR WWKMITRFEL  420
QDDEWIQSLY EDRKKWVPTY MEDTFLAGMS TNQRSESMNS FFDKYIHKKI TLKEFVKQYG  480
SILQNRYEEE AIADFDTWHK QPALKSPSPW EKQMSTVYTH AVFKKFQVEV LGVVGCQPKK  540
ESEDGATITF RVQDCEKDEF FFVLWNETKS EVSCFCRLFE YKGFLCRHAL IVLQICGLSS  600
IPPHYILKRW TKDAKGRTLM AEGTERTKTR VQRYNDLCKH AIELSEEGSL SEETYNIAFR  660
ALVEALRNCV DVNNHNNNAV EYSTNVHGVR EMEEENQGSL VVKTSRKKNT NKKRKVQADQ  720
DVVLVEEQDT LQQMDNLSSD SITLNGYYGA QQNVQGLVQL NLMEPPHDSY YVNQQSIQGL  780
GQLNSIAPGP DSYFGAQQGI HALGQLDFRP PTSFGYSLQD EPHLRSAQLH GNASRHT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015880908.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015880908.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Refseq	XP_015880909.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A251Q247	0.0	A0A251Q247_PRUPE; Uncharacterized protein
STRING	XP_008229655.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]