PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015880904.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 855aa MW: 98840.4 Da PI: 7.5725

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015880904.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.8	2.1e-24	99	185	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA++vGF +++++s++sk++g++++ + vCs+ g+++e+ + ++r+ +t+Cka++++k++++gkw+++ + +eHnHe++p XP_015880904.1 99 SFYREYARSVGFGITIKASRRSKKSGKFIDIKIVCSRFGNKRESGAT----VNPRPCIKTDCKASMHMKRKENGKWVIHGFIKEHNHEICP 185 5***************************************99888....9**********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-22	99	185	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.4E-29	267	360	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.815	548	584	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.4E-6	551	581	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.7E-4	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence Send to blast
MEIDLELPTC DREKIDIGSN INVDDVNTMH RNNVEEEHVN SSVPSENLEE THGSNANQIV 60 SSDQDQLDVN IVKVDGLNKG SICEPCSGLE FESKEEAYSF YREYARSVGF GITIKASRRS 120 KKSGKFIDIK IVCSRFGNKR ESGATVNPRP CIKTDCKASM HMKRKENGKW VIHGFIKEHN 180 HEICPDDFYY AIRGRNKQSA IVACEKKGLQ LALDEGDVQI MLEHFMCMQE DNPNFFYALD 240 LDHEKRLKSV FWVYAKGRHD YSKFYDVVFF DTFYVRNKYK IPFIPIVGVN NHFQYILLGC 300 ALVGEETKET FVWLMRTWLK AMGSQSPRVI ITDQDKLFKE AVADVFPDAR HCFCLWHVLR 360 RIPENLGCMM NQNQNFMEKF NKCIYRSWTE EQFERKWWKM VDRFELAENE WVHSLYEDRK 420 MWVPNYMKDT FLAGMSTTER SGSVTSFFDK YIFPETMFKE FIGRLYKEYL KDNCDMEATA 480 DFETRHKQPG LRSLSPFEKQ MSSVYTEAIF KKFQVEVLGV GSCHLKKQSE NEAAVIFQVD 540 DFEKRQNFIV VWNEAERKIC CLCRSFEYGG FLCRHALLVL QISGTANIPS HYILKRWTRD 600 AKVNQTTIEI PKRLNFRFQR FNDLCKLAIK LGEEGSLCPE ACHIALQALD EVLKQCVDVN 660 NSVRSVLEPN MSAFPGFLNV EEKHGNSMGK STKKKKTYRK RKGQSDPERT TGRMQESRQQ 720 MMNSRARNLD NCYIPQQDMQ EVLGSRAPAI DDYYAAQDSI QGVGRLNSVS PIGDGYYCNQ 780 QGMQGQLHLA STRVGHYGTQ QNMQGLLQGQ PSFRVAAMHG CFNIQDNMQD VDQSVGSSHF 840 RSIASKHLQD KHLSQ

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence Send to blast

MEIDLELPTC DREKIDIGSN INVDDVNTMH RNNVEEEHVN SSVPSENLEE THGSNANQIV  60
SSDQDQLDVN IVKVDGLNKG SICEPCSGLE FESKEEAYSF YREYARSVGF GITIKASRRS  120
KKSGKFIDIK IVCSRFGNKR ESGATVNPRP CIKTDCKASM HMKRKENGKW VIHGFIKEHN  180
HEICPDDFYY AIRGRNKQSA IVACEKKGLQ LALDEGDVQI MLEHFMCMQE DNPNFFYALD  240
LDHEKRLKSV FWVYAKGRHD YSKFYDVVFF DTFYVRNKYK IPFIPIVGVN NHFQYILLGC  300
ALVGEETKET FVWLMRTWLK AMGSQSPRVI ITDQDKLFKE AVADVFPDAR HCFCLWHVLR  360
RIPENLGCMM NQNQNFMEKF NKCIYRSWTE EQFERKWWKM VDRFELAENE WVHSLYEDRK  420
MWVPNYMKDT FLAGMSTTER SGSVTSFFDK YIFPETMFKE FIGRLYKEYL KDNCDMEATA  480
DFETRHKQPG LRSLSPFEKQ MSSVYTEAIF KKFQVEVLGV GSCHLKKQSE NEAAVIFQVD  540
DFEKRQNFIV VWNEAERKIC CLCRSFEYGG FLCRHALLVL QISGTANIPS HYILKRWTRD  600
AKVNQTTIEI PKRLNFRFQR FNDLCKLAIK LGEEGSLCPE ACHIALQALD EVLKQCVDVN  660
NSVRSVLEPN MSAFPGFLNV EEKHGNSMGK STKKKKTYRK RKGQSDPERT TGRMQESRQQ  720
MMNSRARNLD NCYIPQQDMQ EVLGSRAPAI DDYYAAQDSI QGVGRLNSVS PIGDGYYCNQ  780
QGMQGQLHLA STRVGHYGTQ QNMQGLLQGQ PSFRVAAMHG CFNIQDNMQD VDQSVGSSHF  840
RSIASKHLQD KHLSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015880904.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015880904.1	0.0	protein FAR1-RELATED SEQUENCE 2-like isoform X3
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A2N9EY90	0.0	A0A2N9EY90_FAGSY; Uncharacterized protein
STRING	XP_008229651.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]