PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015880809.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

MYB_related

Protein Properties

Length: 406aa MW: 46818.6 Da PI: 9.8082

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015880809.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39	1.9e-12	22	62	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E ll+++++++G ++W+ +a+++g +++ qc+++++ XP_015880809.1 22 WNADEGSLLLEGIEMYGFRNWSEVAEHVG-TKSKAQCINHYN 62 ***************************.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.22E-12	16	64	IPR009057	Homeodomain-like
PROSITE profile	PS51293	18.073	17	69	IPR017884	SANT domain
SMART	SM00717	1.7E-9	18	67	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-11	21	62	IPR001005	SANT/Myb domain
CDD	cd00167	1.71E-10	22	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.6E-9	22	64	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MSPFCRNINL DNLAYPLICP DWNADEGSLL LEGIEMYGFR NWSEVAEHVG TKSKAQCINH 60 YNATICMNSP FFPLLDLSHV MKKSREELLA MAKELKEDTM KQAFNKFQCL GRLQWKRSPP 120 FSARVKYDES RKGPIPQSSA LLTSGTETNI LETMFPHGDF CLYILYVSCT TDKACILLKS 180 KVVTGSVLGA VKKTSNKIQI NDEANAEELQ VKLRWTGVLE RKARLSGEKP FMMELSGYNS 240 KRQEFKIEYD NDAEQLLADM EFKDSDTNTE RELKLQVLHI YSKRLFKYLM RGNTGKTSYR 300 KEICFILTLL RKISHQKRRI CNCRLGFHAV SICQKDTRSS AKILCHSPKY KFASKLELLV 360 AEQFMRQIGS LNRRGRGKPE KMHLELRRVL RLVLVVKVQK ALSCQW

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MSPFCRNINL DNLAYPLICP DWNADEGSLL LEGIEMYGFR NWSEVAEHVG TKSKAQCINH  60
YNATICMNSP FFPLLDLSHV MKKSREELLA MAKELKEDTM KQAFNKFQCL GRLQWKRSPP  120
FSARVKYDES RKGPIPQSSA LLTSGTETNI LETMFPHGDF CLYILYVSCT TDKACILLKS  180
KVVTGSVLGA VKKTSNKIQI NDEANAEELQ VKLRWTGVLE RKARLSGEKP FMMELSGYNS  240
KRQEFKIEYD NDAEQLLADM EFKDSDTNTE RELKLQVLHI YSKRLFKYLM RGNTGKTSYR  300
KEICFILTLL RKISHQKRRI CNCRLGFHAV SICQKDTRSS AKILCHSPKY KFASKLELLV  360
AEQFMRQIGS LNRRGRGKPE KMHLELRRVL RLVLVVKVQK ALSCQW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015880809.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015900773.1	2e-95	transcriptional adapter ADA2-like isoform X2
TrEMBL	W9RN14	2e-84	W9RN14_9ROSA; Transcriptional adapter
STRING	XP_010104082.1	3e-85	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1537	17	26