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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015880672.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ARF | ||||||||
Protein Properties | Length: 947aa MW: 104803 Da PI: 6.2592 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.4 | 1.4e-23 | 132 | 233 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_015880672.1 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytMQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 222 99*****************************96555544..8************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_015880672.1 223 KNQLLLGIRRA 233 9999****997 PP | |||||||
2 | Auxin_resp | 118.5 | 5.4e-39 | 258 | 341 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+ S+Wrs+k XP_015880672.1 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSSSHWRSVK 341 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.24E-48 | 117 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.2E-42 | 125 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.18E-21 | 131 | 232 | No hit | No description |
Pfam | PF02362 | 1.2E-21 | 132 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-24 | 132 | 234 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.478 | 132 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.2E-34 | 258 | 341 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.8E-7 | 803 | 894 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.11E-7 | 805 | 886 | No hit | No description |
PROSITE profile | PS51745 | 24.865 | 812 | 902 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 947 aa Download sequence Send to blast |
MRLSSSSSSS GFNHQPQEGE KKCLNSELWH ACAGPLVSLP PVGSRVVYFP QGHSEQVAAS 60 TNKEVDAHIP NYPNLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKDVYLLPAE 120 LGTPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYTMQPPAQ ELIARDLHDN 180 EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM 240 PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG 300 MRFRMLFETE ESSVRRYMGT ITGISDLDPV RWSSSHWRSV KVGWDESTAG ERQPRVSLWE 360 IEPLTTFPMY PSPFPLRLKR PWPSGLPSFH GMVVFLLVTG KTLDFFLELC LKFNLFFFDF 420 SDANNSALKD GDMSINSPLM WLQGGVGDQG MQSLNFQGFG VTPWVQPRLD ASLPGLQPDL 480 YQAMAAAALQ EMRAVDPTKC SSQSLLPFQQ SQNVSNGPAG LIQRQMLPQS QSQSTFLQSF 540 QENQAPAQAQ LLQQQIQRYH PYSDQRQQQH QQQQQPQLQQ SQQLHQLSVQ QHIPNVISSL 600 SNFASVTQSH SPSLQAIPSQ CQQQTFTDPV TNPISSSDVS PMHSILGSLS QDGGSHLLNL 660 NGSNSVISSS SLLSKQITVE PQLPSGTAQC VLPQVEQLGT PQSSNVSELA SLPPFPGREY 720 SSYQGATDPQ SNLLFGVNID SSSLMLQNGM SNLRNIGSEN DSLSMPFGSS NYSSAAGTDF 780 PLNSDMTTSS CVDESGFLQS SENVDQANPP TRTFVKVHKA GSFGRSLDIS KFSSYDELRS 840 ELARMFGLEG QLQDPQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVWYIK ILSPLEVQEM 900 GKNGLNPTSS VPSQKLRNSS NTCDDFVGRQ ELRNSSNGIA SMGSLDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-164 | 17 | 362 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015880672.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015880673.1 | 0.0 | auxin response factor 6-like | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | W9S1H8 | 0.0 | W9S1H8_9ROSA; Multifunctional fusion protein | ||||
STRING | XP_010106165.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1765 | 34 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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