PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015880286.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 548aa MW: 62973.3 Da PI: 9.5967

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015880286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.8	7.2e-08	17	57	50	90
FAR1 50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++ +r tr +Ckakl + ++k+gk+++t +++eH+H+l+ XP_015880286.1 17 DKSLNRGMTRENCKAKLAMVRSKTGKFVITVFVEEHSHPLS 57 46668999*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-5	15	57	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-30	129	222	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.126	385	417	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.3E-5	388	411	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.3E-4	392	419	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
MTFTFPKWPK TANQRLDKSL NRGMTRENCK AKLAMVRSKT GKFVITVFVE EHSHPLSTPR 60 RGHLLRSHRS VSEAKKSLTL QFSAANVPTH QQISILEFEA GDVDDDGKLK RCFWADSVSR 120 RAYGCFGDVV VFDTTYNTNQ YGMIFAPLVG VNNYGQTMLF ACAFLSDEKT ESFVWLFELL 180 QDSMPTNNPK MIINDQDPAM TKAIVQSLPN TFHRYCSWHI LEKFSTYLNA ITYKDFYKDF 240 QQCIWESECP EEFERKWVTT IEKASLDNND WLKSIFKLCS RWVLAYVNHI FSAGMSSSQR 300 AESSHAFFKK YVSKRNLLMD FILRFNRALA QQRHEELGAN HVDINEKLNS LVIMPQFVHE 360 NATHKMYVVK SSPKERVRRL REIAYDKELD FASCPCKKFE SEGLPCRHIL AFLRLFGNIP 420 LPNQYIMKRW TRGVKCQIIT DKQGVEISGQ RSSMLTWRAK LFQLASEVID KAIIYEEASV 480 IMNDGLQSLL GKIESIVSNT KSGGIYEKGS TAHDYEALKD PSAVRAKGYG QRLKRGKEKA 540 TNAAKYRG

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

MTFTFPKWPK TANQRLDKSL NRGMTRENCK AKLAMVRSKT GKFVITVFVE EHSHPLSTPR  60
RGHLLRSHRS VSEAKKSLTL QFSAANVPTH QQISILEFEA GDVDDDGKLK RCFWADSVSR  120
RAYGCFGDVV VFDTTYNTNQ YGMIFAPLVG VNNYGQTMLF ACAFLSDEKT ESFVWLFELL  180
QDSMPTNNPK MIINDQDPAM TKAIVQSLPN TFHRYCSWHI LEKFSTYLNA ITYKDFYKDF  240
QQCIWESECP EEFERKWVTT IEKASLDNND WLKSIFKLCS RWVLAYVNHI FSAGMSSSQR  300
AESSHAFFKK YVSKRNLLMD FILRFNRALA QQRHEELGAN HVDINEKLNS LVIMPQFVHE  360
NATHKMYVVK SSPKERVRRL REIAYDKELD FASCPCKKFE SEGLPCRHIL AFLRLFGNIP  420
LPNQYIMKRW TRGVKCQIIT DKQGVEISGQ RSSMLTWRAK LFQLASEVID KAIIYEEASV  480
IMNDGLQSLL GKIESIVSNT KSGGIYEKGS TAHDYEALKD PSAVRAKGYG QRLKRGKEKA  540
TNAAKYRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015880286.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015880286.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	V4URE3	1e-177	V4URE3_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006428864.1	1e-178	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13280	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-73	FAR1-related sequence 5