PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880243.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 326aa    MW: 36245.1 Da    PI: 5.9626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.88.3e-183382255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+e E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  XP_015880243.1 33 RSKHSETEQRRRSKINERFQILRDLIPQD----DQKKDKASFLLEVIEYIRFLQ 82
                    899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.5E-2328103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1928102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-172985No hitNo description
PROSITE profilePS5088816.9073181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-153382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-133787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MVKPSKGHHE ELEDDDEVPH RVKVDGKNRE KNRSKHSETE QRRRSKINER FQILRDLIPQ  60
DDQKKDKASF LLEVIEYIRF LQEKLNMYEG SYPGWSSEPT KLTPWRNQHG PTPTESFVDH  120
PQVIKSDSGL QNNVSVSPSM LCNAPNLVET ELGSTVVYKS LDHLPGSAGQ VAPLNVQQPI  180
FDSIGRGGVP TQPLQESVSD AVNIDSQPQQ PELWSGRHTT DCSVLNNTPN FQEKSRSVSI  240
SSAYSKGILD TLTQALRSSG MDLSQASISV QIDVGNGADN GVTSMASSSK DHVNQTMNSQ  300
VMAHTQVTSS SDQFEQAHKR LRTEEN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00534DAPTransfer from AT5G38860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880243.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880243.10.0transcription factor BIM3-like isoform X1
TrEMBLA0A2P5E9A71e-155A0A2P5E9A7_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_009373761.11e-133(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-58BES1-interacting Myc-like protein 2