PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880067.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 345aa    MW: 39158.9 Da    PI: 7.2642
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880067.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.3e-33189246259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+Hnh+
  XP_015880067.1 189 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCGVKKRVERSYQDPSIVITTYEGQHNHQ 246
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-34173248IPR003657WRKY domain
SuperFamilySSF1182903.79E-29181248IPR003657WRKY domain
PROSITE profilePS5081132.019183248IPR003657WRKY domain
SMARTSM007744.7E-38188247IPR003657WRKY domain
PfamPF031064.1E-26189246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSNEERDPYN HYDPFNYSHQ EMDRSCFPFF NDNSSSLLQN HHHQQVVTPQ NHQVFDSNPS  60
YMSFTDCLHG SMDYNILSRA FDMSCSSSEV ISQIDDGSKK AVGESVGTSE NNNPSTPNSS  120
ISSSSNEAPA TAAAEEDSVK SKKEKNPKGS EEGDDEDKSK KVTKTKKKEK RQREPRFAFL  180
TKSEVDHLED GYRWRKYGQK AVKNSPYPRS YYRCTTQKCG VKKRVERSYQ DPSIVITTYE  240
GQHNHQCPAT LRGNATGMLS TSLLASAASG RPSLPHEFLT QFLPMNHHHH HHHQHNQAGQ  300
QPSNSMLYSN LNIHNHHQQQ LQVPPDFGLL QDLVPSFSHK QQLDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-301812491078Probable WRKY transcription factor 4
2lex_A3e-301812491078Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172KEKRQR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880067.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880067.10.0probable WRKY transcription factor 71
SwissprotQ8VWJ22e-62WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A2N9G5S51e-125A0A2N9G5S5_FAGSY; Uncharacterized protein
STRINGEOX930301e-119(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-57WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]