PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015879577.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 334aa    MW: 37724.8 Da    PI: 4.4526
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015879577.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.4e-1995148356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  XP_015879577.1  95 KKRRLSVDQVQFLEKSFELENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 148
                     556899***********************************************9 PP
2HD-ZIP_I/II125.23e-4095184291
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     kkrrls +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdyeaL ++y++lk++ e+L ke+++++ e+
  XP_015879577.1  95 KKRRLSVDQVQFLEKSFELENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALLANYNSLKADYETLFKENDKMKVEI 184
                     9************************************************************************************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.58E-1979152IPR009057Homeodomain-like
PROSITE profilePS5007116.98990150IPR001356Homeobox domain
SMARTSM003893.8E-1992154IPR001356Homeobox domain
CDDcd000861.14E-1793151No hitNo description
PfamPF000461.2E-1695148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-1997157IPR009057Homeodomain-like
PRINTSPR000311.4E-5121130IPR000047Helix-turn-helix motif
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PRINTSPR000311.4E-5130146IPR000047Helix-turn-helix motif
PfamPF021831.3E-12150191IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MNMGGSRVLG GVTVLLQNQK GLSSASQPLD PLFLSGSSKN SSSSSSSSSF LGSRSMMSFQ  60
NVHGGNGSNT SLFQSFDHDE NGDDEFDEYF HQPGKKRRLS VDQVQFLEKS FELENKLEPE  120
RKIQLAKDLG LQPRQVAIWF QNRRARWKTK QLEKDYEALL ANYNSLKADY ETLFKENDKM  180
KVEILALKDK LLLREKEGVN LELSETNKLL EQTQKMPSEE ELALKDEVSK VSAMVCKQED  240
ISSAKSDILD ADSPSRYTDG AHSSVLMEPA DSSYVFEPDQ SDLSQDEEDN LNKSLFPSYI  300
FPKLEYEDYS DPPASSCNFG FPAVEDNAFW SWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015879577.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879577.10.0homeobox-leucine zipper protein HAT5-like
SwissprotQ940J18e-42ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A061FXY91e-152A0A061FXY9_THECC; Homeobox protein, putative isoform 1
STRINGEOY217131e-151(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.17e-43homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]