PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015879300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 19210.3 Da PI: 7.4644 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.8 | 2.1e-44 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+ XP_015879300.1 11 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELD 105 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_015879300.1 106 ATNA 109 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.673 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.2E-44 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MASSSSYSNS PCAACKFLRR KCMPDCIFAP YFPPEEPQKF ANVHKIFGAS NVSKLLNEVL 60 PHQREDAVNS LAYEAEARMK DPVYGCVGAI SVLQRQVIRL QKELDATNAD LMRYACNEMP 120 ADHHSHYAGS RRSNNSNNNS GHGSGGAGSS WGLNSGLYFS SPWNDSQERG TEGNM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-69 | 2 | 119 | 2 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-69 | 2 | 119 | 2 | 119 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015879300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015879300.1 | 1e-130 | LOB domain-containing protein 25 | ||||
Refseq | XP_015897788.1 | 1e-130 | LOB domain-containing protein 25-like | ||||
Swissprot | Q8L8Q3 | 4e-70 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A2I4HUL4 | 2e-89 | A0A2I4HUL4_JUGRE; LOB domain-containing protein 25-like | ||||
STRING | POPTR_0001s35280.1 | 2e-88 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1091 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 6e-68 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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