PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 691aa MW: 80283.8 Da PI: 6.1308

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015879264.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.5	4.1e-22	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk t +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel XP_015879264.1 68 EYYSNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPMKKKPTGEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNVHNHELL 159 69******************8888.***************************************99877789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-20	68	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-20	291	384	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.002	563	598	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.8E-6	571	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.2E-4	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
MTSIPSKNIW IRRQQCPCGD WKCYVTYEGD AEETNIASQL VKNDNTPSEA MVSPYVGMVF 60 KSDDDAFEYY SNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPMK KKPTGEHHRD 120 RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIHGGQLP FLERDVRNFV QNRKKVVQEN DALLTEKREN 240 DTAELLEACK VTKEADEDFV YDFTVDENDK VENIAWAYGD SIRANSIFGD VVYFDTTYRS 300 ITYGMLFGAW LGIDNHGKAI FFGCVLLQDE TSRSFSWALQ TFVRFMRGRY PQTVLTDFDP 360 GLRDAIRSEL PATKHVITLW NIQSKLSSWF SLPLGSRYAE FKSEFDALYR LESTEEFELQ 420 WNQMVSLFGL GTDKHIILLY SSRASWALSY MRGYFLARMA TTVYLKSVDA FLKGVFNAQT 480 CLRSFFEQVG ISANFQNQTH QEMQYMYIKT CVPIEEHARG ILTPFAFNAL QHELALAMQY 540 STSERPDGSY LVHHFKNLDA DRLVIWIPEE EHVHCSCKEF ESSGTLCRHA LRVLILKNYF 600 QLPDKYYLNR WRRESSIVFY DDNGTQHSED EWFQEYQCLS ETLFSESSIT KERSDYVRRE 660 LGKELSRLLD EVRNMPESDG VTMDLTLSPT G

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

MTSIPSKNIW IRRQQCPCGD WKCYVTYEGD AEETNIASQL VKNDNTPSEA MVSPYVGMVF  60
KSDDDAFEYY SNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPMK KKPTGEHHRD  120
RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIHGGQLP FLERDVRNFV QNRKKVVQEN DALLTEKREN  240
DTAELLEACK VTKEADEDFV YDFTVDENDK VENIAWAYGD SIRANSIFGD VVYFDTTYRS  300
ITYGMLFGAW LGIDNHGKAI FFGCVLLQDE TSRSFSWALQ TFVRFMRGRY PQTVLTDFDP  360
GLRDAIRSEL PATKHVITLW NIQSKLSSWF SLPLGSRYAE FKSEFDALYR LESTEEFELQ  420
WNQMVSLFGL GTDKHIILLY SSRASWALSY MRGYFLARMA TTVYLKSVDA FLKGVFNAQT  480
CLRSFFEQVG ISANFQNQTH QEMQYMYIKT CVPIEEHARG ILTPFAFNAL QHELALAMQY  540
STSERPDGSY LVHHFKNLDA DRLVIWIPEE EHVHCSCKEF ESSGTLCRHA LRVLILKNYF  600
QLPDKYYLNR WRRESSIVFY DDNGTQHSED EWFQEYQCLS ETLFSESSIT KERSDYVRRE  660
LGKELSRLLD EVRNMPESDG VTMDLTLSPT G

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015879264.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024930787.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_024930791.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A2N9EZY7	0.0	A0A2N9EZY7_FAGSY; Uncharacterized protein
STRING	XP_010087643.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]