PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015879048.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 842aa MW: 96860 Da PI: 6.5954

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015879048.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.1	6.2e-23	163	249	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA + GFs+rk+ +ks+ ng +++r+++C+k+g+r ++++ +++r+etrtgC a+++++++++gk++v+++e++HnHe++ XP_015879048.1 163 CYSRYAVKEGFSIRKDFVNKSRINGAVVSRRYTCYKQGYRPAKHNT--IMKKPRQETRTGCLAHMTITRQSNGKFRVSHFETKHNHEFV 249 7*************************************999888..9999*********************************97 PP
2	FAR1	79.6	5.7e-25	297	385	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGFsvrk++ ++sk +g + +r+f+C +eg+++ + +r+r+etr+gC a+l+++++ dg+++vt++e++HnHel+ XP_015879048.1 297 EFYNTYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFETGPILL-LNVKRPRKETRIGCLAQLVISRQPDGVYRVTHFEEKHNHELV 385 6***************************************99988.8999**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-21	163	249	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.7E-22	297	385	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-28	507	601	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.631	787	823	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.8E-4	796	822	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-5	798	825	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence Send to blast
MDCVDPDTLN YPLEEDDDDG KLKASSGLDM AVELMCPKAS SVRKSRAVIN SEAEFEIECQ 60 SPKSSSIEDS RLVMDGEHEC QSQNASSLDK SRVEVDGEEC QTPKISHVNK YEMDIEFGPE 120 SQSTNALIDD ISRAGVSIKD EEDVYLVPQV GVEFESEEHA YKCYSRYAVK EGFSIRKDFV 180 NKSRINGAVV SRRYTCYKQG YRPAKHNTIM KKPRQETRTG CLAHMTITRQ SNGKFRVSHF 240 ETKHNHEFVT SCTTHMLPSL KRLAFAEAVQ ADLANNAEMH GVPKLGMGFE SEEHAYEFYN 300 TYAGRVGFSV RKDYVNRSKI DGAVASRRFT CFREGFETGP ILLLNVKRPR KETRIGCLAQ 360 LVISRQPDGV YRVTHFEEKH NHELVAACRV HMLRSQKKFV GAQVVDGNSV DSSNIEPKSN 420 PDLICKKVKD SDGRSYGPID LKSRLPSKRT REMREGEAGK MQQYFQSKQS KNSSFFYAMQ 480 PDADDQITNV FWADTKMVMD YSDFGDVVCL DTTYRLYKDC RPFAPFIGIN HHKQMVIFGA 540 ALLYDETIES YKWLFQTFME AMSGKRPKTI LTDQDAVVAE AIRLILPETH HRISVWHVYQ 600 NALKQLGYMV AGSSCFANDF SRCFFDHEEE EDFISAWNAM LDAYNLWENE WLHDVFEDRE 660 KWALAYRRHI FCADIISVLL CESFTTNLKK YLKCDSDVLQ LLKHLAKVVN DWHYKELEAN 720 YDMTQHPPKL MGDVILLKQA RDIYTPQIFE LFQQEFETCL NIIVNQCTEN GPLLEYKVSI 780 FGQQREYAVT FKSSDKTVSC DCMKFEFVGV LCCHALKVLD YRNIKLLPTQ YILKRWTKNA 840 RV

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence Send to blast

MDCVDPDTLN YPLEEDDDDG KLKASSGLDM AVELMCPKAS SVRKSRAVIN SEAEFEIECQ  60
SPKSSSIEDS RLVMDGEHEC QSQNASSLDK SRVEVDGEEC QTPKISHVNK YEMDIEFGPE  120
SQSTNALIDD ISRAGVSIKD EEDVYLVPQV GVEFESEEHA YKCYSRYAVK EGFSIRKDFV  180
NKSRINGAVV SRRYTCYKQG YRPAKHNTIM KKPRQETRTG CLAHMTITRQ SNGKFRVSHF  240
ETKHNHEFVT SCTTHMLPSL KRLAFAEAVQ ADLANNAEMH GVPKLGMGFE SEEHAYEFYN  300
TYAGRVGFSV RKDYVNRSKI DGAVASRRFT CFREGFETGP ILLLNVKRPR KETRIGCLAQ  360
LVISRQPDGV YRVTHFEEKH NHELVAACRV HMLRSQKKFV GAQVVDGNSV DSSNIEPKSN  420
PDLICKKVKD SDGRSYGPID LKSRLPSKRT REMREGEAGK MQQYFQSKQS KNSSFFYAMQ  480
PDADDQITNV FWADTKMVMD YSDFGDVVCL DTTYRLYKDC RPFAPFIGIN HHKQMVIFGA  540
ALLYDETIES YKWLFQTFME AMSGKRPKTI LTDQDAVVAE AIRLILPETH HRISVWHVYQ  600
NALKQLGYMV AGSSCFANDF SRCFFDHEEE EDFISAWNAM LDAYNLWENE WLHDVFEDRE  660
KWALAYRRHI FCADIISVLL CESFTTNLKK YLKCDSDVLQ LLKHLAKVVN DWHYKELEAN  720
YDMTQHPPKL MGDVILLKQA RDIYTPQIFE LFQQEFETCL NIIVNQCTEN GPLLEYKVSI  780
FGQQREYAVT FKSSDKTVSC DCMKFEFVGV LCCHALKVLD YRNIKLLPTQ YILKRWTKNA  840
RV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015879048.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024928936.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A061EK26	0.0	A0A061EK26_THECC; Far1-related sequence 5, putative isoform 1
STRING	XP_008230452.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-115	FAR1-related sequence 5