PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878985.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 462aa    MW: 52888.7 Da    PI: 8.3556
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +lv+ +   G ++W+ +++  g+ R++k+c++rw +yl
   XP_015878985.1 14 RGPWTIEEDHKLVNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding57.14.2e-1867110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+ E++++++++ +lG++ W++Ia++++ gRt++++k++w++
   XP_015878985.1  67 RGAFTEMEEDQIIQLHSRLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-20564IPR009057Homeodomain-like
PROSITE profilePS5129413.677961IPR017930Myb domain
SuperFamilySSF466891.76E-2811108IPR009057Homeodomain-like
SMARTSM007177.6E-71363IPR001005SANT/Myb domain
PfamPF002495.4E-111461IPR001005SANT/Myb domain
CDDcd001674.05E-51661No hitNo description
PROSITE profilePS5129426.4962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.8E-2665116IPR009057Homeodomain-like
SMARTSM007174.5E-1766114IPR001005SANT/Myb domain
PfamPF002491.9E-1667110IPR001005SANT/Myb domain
CDDcd001671.47E-1169110No hitNo description
PfamPF061551.1E-19355432IPR010376Domain of unknown function DUF971
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLVNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TEMEEDQIIQ LHSRLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKRLKLLG  120
LDPVPHNPTE LQKENDDDDE AKKEVTVSDH GQENSLEEAK VGRQDIGHAK RVSPETNEKK  180
RNSVELNSLD ETTNELLESY EMLCGNFNLG LPWMIDHQET NTNTTTTTSY TSSSFSLEEY  240
SNNPSSIVES SSIIHEDNSL QQWADSTTMD SNSILSWDIG FNNPLEQDLL FFEKYSQYLT  300
SYPPLAKVTR LGMRSGLEGG EDRKGRMLAM QSVSRRIHSM VDAPRLTKFF LEAPQSVKVE  360
FSNGSVFNLS AEFLRIHSPA ADGKLRSIGG EKVISGRRHV GIMSAEPVGN YGVRLIFDDL  420
HKTGIYSWDY FYHLGSNKFS LMRNYIKTLR KYGLSREPTR RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878897.10.0myb-related protein 315-like
RefseqXP_024928119.10.0myb-related protein 315-like
TrEMBLA0A200RCT11e-161A0A200RCT1_9MAGN; SANT/Myb domain
STRINGXP_008230923.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.14e-80myb domain protein 40