PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015878863.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | B3 | ||||||||
Protein Properties | Length: 118aa MW: 13801.7 Da PI: 9.7297 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45 | 2e-14 | 9 | 102 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt+ dv + l++p k+++ h ++++ l++ d sg+++e++l+ r +++ ++++ GW +Fv +++L+ gD + F + +++++ XP_015878863.1 9 FVKELTKTDVEDK--LSVPSKYVSYHRLNHH--ARLQVADfDSGNVYEFQLSLREAGNKptFMFQ-GWHRFVVEKQLRIGDKIYFDKM--EDGTF 96 8999999999876..9*******99999955..479999*9999*******99777777746666.********************44..66666 PP EEEEE- CS B3 93 vvkvfr 98 ++kv+ XP_015878863.1 97 RIKVLP 102 888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.2E-16 | 3 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-15 | 6 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.433 | 7 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.54E-11 | 8 | 102 | No hit | No description |
Pfam | PF02362 | 2.6E-11 | 9 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-10 | 9 | 104 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MEKTNKDRFV KELTKTDVED KLSVPSKYVS YHRLNHHARL QVADFDSGNV YEFQLSLREA 60 GNKPTFMFQG WHRFVVEKQL RIGDKIYFDK MEDGTFRIKV LPNSFSRIVP NAETGISS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015878863.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |