PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878839.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 449aa    MW: 49829.7 Da    PI: 7.2361
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878839.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-1763110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT+eEde l++++k+ G g+W+t +++ g+ R++k+c++rw +yl
   XP_015878839.1  63 RGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 110
                      89******************************99************97 PP
2Myb_DNA-binding46.11.1e-14121161648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_015878839.1 121 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 161
                      89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-2254112IPR009057Homeodomain-like
PROSITE profilePS5129416.32258110IPR017930Myb domain
SuperFamilySSF466891.03E-2860157IPR009057Homeodomain-like
SMARTSM007178.4E-1362112IPR001005SANT/Myb domain
PfamPF002495.9E-1563110IPR001005SANT/Myb domain
CDDcd001671.20E-1065110No hitNo description
PROSITE profilePS5129424.404111165IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-24113166IPR009057Homeodomain-like
SMARTSM007171.2E-13115163IPR001005SANT/Myb domain
CDDcd001672.36E-11121161No hitNo description
PfamPF002491.9E-13121161IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MRNPTTTTTT TRGGGGSSTT SSMVGKSSRY MKNNNNNNNN NNNNNKNSNS KMTPCCSKVG  60
LKRGPWTPEE DEVLANYIKK EGEGRWRTLP KRAGLLRCGK SCRLRWMNYL RPSVKRGHIA  120
PDEEDLILRL HRLLGNRWSL IAGRIPGRTD NEIKNYWNTH LSKKLISQGI DPRTHKPLLN  180
SPDSSSPPHP RHHPHDTKPS SSSKPMMINA TQPPPTPSPN PNHSTPSNLT DDQQPDNDIR  240
ADFLQINNNN NNNSNIIHKE KENENENTFF FHATIVANND DHDHYPIQTP DGIGIGTATP  300
ALVHHIHPYH PNFPSSSDHD EHHCSPSNIN HAQLPGNDDD INYCPDDVFS SFLNSLINDD  360
AFAAQAQHQL LLQHPHPNPN PNPTPTSAPP ALSDPNLIST SATATATAPT TTYALPTTTW  420
DSSLLSSTTT TFNHNHPNST IADDHHQME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24611655108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878839.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878839.10.0transcription factor MYB30
TrEMBLA0A061EW761e-103A0A061EW76_THECC; Myb domain protein 5 isoform 1
TrEMBLA0A411PZP81e-102A0A411PZP8_CITAR; R2R3-MYB family transcription factor
STRINGEOY089081e-103(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-79myb domain protein 5