PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878753.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 380aa    MW: 43535 Da    PI: 6.9069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878753.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.78.4e-32106212199
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k ltpsdv+k++rlv+pk++ae++        g +  ++  l++ede g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F+++++
  XP_015878753.1 106 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgggggGDSVDKGLLLSFEDELGKFWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFERHRT 200
                     99*****************************998555568899************************************************9888 PP

                     SEE..EEEEE-S CS
              B3  88 sefelvvkvfrk 99 
                     ++++l+++++r+
  XP_015878753.1 201 DSERLFIGWRRR 212
                     9999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-39101216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-31102211IPR015300DNA-binding pseudobarrel domain
CDDcd100175.23E-29104203No hitNo description
SMARTSM010196.4E-25106213IPR003340B3 DNA binding domain
PROSITE profilePS5086313.874106213IPR003340B3 DNA binding domain
PfamPF023621.1E-28106212IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDNNTPSSKP HYLPPHHPLY HSNINNPSQQ HYYQSSNWHN SNNPQHSTSI PMYHTPNNNL  60
NFNLNNQLDY NDEDVDDQIA DSATELNNNQ NQDQYQQDHL EKEPMFEKPL TPSDVGKLNR  120
LVIPKQHAEK YFPLGGGGGG DSVDKGLLLS FEDELGKFWR FRYSYWNSSQ SYVLTKGWSR  180
YVKEKRLDAG DVVLFERHRT DSERLFIGWR RRTVPDSGGT VAQVNGGESA GGWTRMLYSA  240
HPYPTHPHHH HHAVPYQPDC LHAGSPAQNQ TTPVGNSRIL RLFGVNLRIT QHVLRDYTGS  300
PAQNQTTPVG NSRILRLFGV NMECQPDDSE PSTPDGSSLS THGPSHQQFY PPYHSDHMVR  360
HPFFIIIYIY IFNLLLFKLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-481012123113B3 domain-containing transcription factor NGA1
5os9_B5e-481012123113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878753.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024928202.10.0B3 domain-containing protein At2g36080 isoform X1
RefseqXP_024928203.10.0B3 domain-containing protein At2g36080 isoform X2
SwissprotQ8GYJ28e-62Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLF6HKN61e-104F6HKN6_VITVI; Uncharacterized protein
STRINGVIT_08s0007g02810.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.15e-65B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]