PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878665.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 298aa    MW: 34048 Da    PI: 9.6918
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878665.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.9e-18261181100
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+ ++s   +++ l lp+kf +++g++   s   t++ ++gr W++ l  +k +gr+v+ +GW+eFv+ + +++g f+vF++dg s+f  +v+
  XP_015878665.1  26 FFKAIITSTIRNQK-LKLPRKFSRKFGNE--LSAIATITVPNGRIWKLGL--QKIGGRIVFVDGWQEFVEYHSIDSGYFLVFRYDGFSKF--HVR 113
                     88888887777666.***********855..88999**************..********************************998999..*** PP

                     EE-SS CS
              B3  96 vfrks 100
                     +++ks
  XP_015878665.1 114 ILDKS 118
                     99985 PP
2B358.11.6e-182042871396
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +++l +p  f+ ++++   +s+ +tle+ +g++W+v+++   r++ +++ ++kGW++F ++n+L +gD++vF+l++++ + l+v++
  XP_015878665.1 204 KKNLHVPMGFVMKYMQ--GCSQVITLETCNGKKWQVTFSLkeRRTTNKIRISKGWRGFLRDNNLGAGDVCVFELIKKKATLLKVSI 287
                     345999*****99984..5999****************9877888888***************************98777667666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-2318118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-2221125IPR015300DNA-binding pseudobarrel domain
CDDcd100173.69E-1725116No hitNo description
PROSITE profilePS5086313.88825118IPR003340B3 DNA binding domain
PfamPF023621.5E-1426117IPR003340B3 DNA binding domain
SMARTSM010198.2E-1926118IPR003340B3 DNA binding domain
PROSITE profilePS5086313.521192291IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-20194288IPR015300DNA-binding pseudobarrel domain
CDDcd100175.31E-20194288No hitNo description
SMARTSM010192.0E-15195291IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-20196285IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-16204287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGAKQKGGPS TSSGRMQESH SPPMHFFKAI ITSTIRNQKL KLPRKFSRKF GNELSAIATI  60
TVPNGRIWKL GLQKIGGRIV FVDGWQEFVE YHSIDSGYFL VFRYDGFSKF HVRILDKSAT  120
EIDYPWNAPS SDVEPHSDEE SPEDHDQDDE DDDDDDVEII DNKMFASTHL CRRQMSMKNK  180
RAIRAATSCK YAHPSFIVLL PGHKKNLHVP MGFVMKYMQG CSQVITLETC NGKKWQVTFS  240
LKERRTTNKI RISKGWRGFL RDNNLGAGDV CVFELIKKKA TLLKVSIYYA DPEKKCSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-1416328815140B3 domain-containing transcription factor VRN1
4i1k_B7e-1416328815140B3 domain-containing transcription factor VRN1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878665.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878665.10.0putative B3 domain-containing protein Os03g0621600
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-28B3 family protein