PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878653.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 367aa    MW: 42079.9 Da    PI: 8.934
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.6e-15201121100
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+ +ps     + l +p+kf +++ +  e s   t++ ++  +W++ l  +k  gr+ + +GW++Fv+ + + +g f+vF+++g s+f  +v 
  XP_015878653.1  20 FFKIILPSTLKD-QKLKIPRKFGKKIVN--ELSSIATITVPNCHTWKLGL--EKANGRISFVDGWQQFVDYHSIASGYFLVFRYEGFSKF--HVY 107
                     777776665555.56********99953..3666899999**********..********************************987888..*** PP

                     EE-SS CS
              B3  96 vfrks 100
                     +f+ks
  XP_015878653.1 108 IFDKS 112
                     **985 PP
2B3536.2e-17255341490
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     vl++ ++l+ + + +p +f+ +++ +  +s  ++l++ sg ++W vk++ +k++++   +tkGW+ Fvk+n+Lk+ D++vF+l+++++ 
  XP_015878653.1 255 VLLRRYNLSCHYVDVPGEFVMKYMRN--CSDFIKLKSFSGnKKWHVKCSLQKGKKSiKRITKGWNVFVKDNNLKVDDVCVFELVKHKQD 341
                     5678899999999**********977..8889*****8887*******99888888799***********************9987554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-2018119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-2118113IPR015300DNA-binding pseudobarrel domain
CDDcd100173.61E-1419110No hitNo description
PROSITE profilePS5086312.46419112IPR003340B3 DNA binding domain
PfamPF023624.6E-1220111IPR003340B3 DNA binding domain
SMARTSM010191.7E-1420112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-21245349IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-18247339IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.956252353IPR003340B3 DNA binding domain
SMARTSM010195.1E-12253353IPR003340B3 DNA binding domain
CDDcd100175.11E-14253350No hitNo description
PfamPF023622.1E-14255340IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAATKLNNHL RGSDCLPMHF FKIILPSTLK DQKLKIPRKF GKKIVNELSS IATITVPNCH  60
TWKLGLEKAN GRISFVDGWQ QFVDYHSIAS GYFLVFRYEG FSKFHVYIFD KSCTEIDYPI  120
MNGVCNKLEP KKEVADDDSD DDVEILEHYA DQQGCKKRKK PCQCATCMKC KVPRKSKNCK  180
LEEQEDEIAL SGDVNIFNGN KMPASYGLTT IDEDGLMFIC RSFLSSKIKP VISKESERAI  240
NAARSCKRTH PSFLVLLRRY NLSCHYVDVP GEFVMKYMRN CSDFIKLKSF SGNKKWHVKC  300
SLQKGKKSIK RITKGWNVFV KDNNLKVDDV CVFELVKHKQ DDILLEVSIY YADEYADPVK  360
KCSKCGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1822535521145B3 domain-containing transcription factor VRN1
4i1k_B2e-1822535521145B3 domain-containing transcription factor VRN1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKRKK
2158174KKPCQCATCMKCKVPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878653.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878653.10.0B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-51B3 family protein